Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,415,331 – 15,415,425 |
Length | 94 |
Max. P | 0.958557 |
Location | 15,415,331 – 15,415,425 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.37 |
Mean single sequence MFE | -39.44 |
Consensus MFE | -18.80 |
Energy contribution | -20.48 |
Covariance contribution | 1.68 |
Combinations/Pair | 1.08 |
Mean z-score | -2.55 |
Structure conservation index | 0.48 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958557 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15415331 94 - 23771897 CGUCU--------UCACAACCUGGCAACUUCGCAUCUUAGCAU-------CUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAU------GAGGAAGAUGC-GGAA .(((.--------.........)))...((((((((((..(((-------(.((.(((.((.((((.(((......)))))))))))).)))))------)...)))))))-))). ( -37.20) >DroSec_CAF1 144418 95 - 1 GGUGU--------UAGCGUAUUCUCAAUUUUGCAUCUUUUCAU-------CUAGGAUCUAGACAUCGCGUUCAAUUGCGGAUUCGCAUGCGGAU------GAGGCAGAUGCCGCAA .....--------..(((.............((((((((((((-------((.((((((.(....)(((......)))))))))(....)))))------)))).))))))))).. ( -24.11) >DroSim_CAF1 147957 94 - 1 CGUCU--------UCGCAUCCUGGCAACUUCGCAUCUUAGCAU-------CUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAU------GAGGAAGAUGC-GGAA (((((--------((.(((((..(((..(((((((((..(((.-------..((((.(.((....)).).)))).)))))))))))))))))))------)..))))))).-.... ( -40.50) >DroEre_CAF1 145221 102 - 1 CAUCCUCCCGUCUUCGCAUCCUGGCAACCUCGCAUCUUAGCAU-------CUCGGAUCUCGACAUCGCGUUCCGCUGCGGAUGCGGAUGCGGAU------GAGCAAGAUGC-GGAA .....((((((((((.(((((.(....)...((((((..((((-------((((((.(.((....)).).))))....))))))))))))))))------).).)))))).-))). ( -41.20) >DroYak_CAF1 148946 115 - 1 CGUCUUCGCAACUUCGCAUCCUGGCAACCUCGCAUCUUAGCAUCUCGCAUCUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAUGAGGAUGAGGAAGAUGC-GGAA ....((((((.((((.(((((((....).((((((((..(((((.((((...((((.(.((....)).).)))).)))))))))))))))))...))))))..)))).)))-))). ( -54.20) >consensus CGUCU________UCGCAUCCUGGCAACUUCGCAUCUUAGCAU_______CUCGGAUCUCGACAUCGCGUUCCGUUGCGGAUGCGGAUGCGGAU______GAGGAAGAUGC_GGAA .............((((((((.(....)...((((((..(((..........((((.(.((....)).).)))).)))))))))))))))))........................ (-18.80 = -20.48 + 1.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:47 2006