Locus 5619

Sequence ID 3L_DroMel_CAF1
Location 15,415,199 – 15,415,295
Length 96
Max. P 0.884110
window8878

overview

Window 8

Location 15,415,199 – 15,415,295
Length 96
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 86.26
Mean single sequence MFE -36.17
Consensus MFE -29.61
Energy contribution -30.42
Covariance contribution 0.81
Combinations/Pair 1.15
Mean z-score -2.60
Structure conservation index 0.82
SVM decision value 0.93
SVM RNA-class probability 0.884110
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15415199 96 + 23771897
GCAUUCCCACCUGUUCGUUGGUU--------CGCCAGCUCGGUGGCUCACUGCUCCAUCACCUGGAGCAUUCAGUUGACCUCAGCAUCGACAGCUGGAGCAACA
......(((((.(...(((((..--------..))))).)))))).....(((((((.....)))))))....((((.(..((((.......))))..))))). ( -35.00)
>DroSec_CAF1 144286 96 + 1
GCAUUCCCACCUGUGCGCUGGUU--------CGCCGGCUCGGUGGCUCAAUGCUCCAUCACCUGGAGCAUUCACUUGACGUCAGCAUCGACAGCUGGAGCAACA
((((........))))(((((..--------..)))))...((.(((((((((((((.....)))))))))..........((((.......)))))))).)). ( -36.50)
>DroSim_CAF1 147825 96 + 1
GCAUUCCCACCUGUUCGCUGGUU--------CGCCAGCUCGGUGGCUCACUGCUCCAUCACCUGGAGCAUUCAGUUGACCUCAGCAUCGACAGCUGGAGCAACA
......(((((.(...(((((..--------..))))).)))))).....(((((((.....)))))))....((((.(..((((.......))))..))))). ( -37.40)
>DroEre_CAF1 145081 104 + 1
GCAUUCCCACCUGUUCGCUGGUUCGCUGGUUCGCCAGCUCGGUGGCUCACUGCUCCAUCACCUGGAGCAUUCAGUUGACCUCAGCAUCGACAGCUGGAGCAACA
((....(((.(((((.(((((...(((((....)))))..(((((((.(.(((((((.....))))))).).)))).))))))))...))))).))).)).... ( -40.10)
>DroYak_CAF1 148806 104 + 1
GCAUUCCCACCUGUUCGCUGGUUCGCCAGUUCGCCAGUUCGGUGGCUCACUGCUCCAUCACCUGGAGCAUUCAGUUGACCUCAGCAUCGACAGCUGGAGCAACA
......(((((.(...((((((.(....)...)))))).)))))).....(((((((.....)))))))....((((.(..((((.......))))..))))). ( -35.60)
>DroAna_CAF1 288401 102 + 1
CC--UGCCACCUCCUGGCAGUCCCACCUGUUCGCCGGCUCACUGCUCCAUUGCCACAUCACCUGGAGCAUUCAGUUGACCUCAGCAUCGACAGCUGGAGCAACA
.(--(((((.....))))))........((((.((((((...(((((((.............)))))))....(((((........))))))))))).).))). ( -32.42)
>consensus
GCAUUCCCACCUGUUCGCUGGUU________CGCCAGCUCGGUGGCUCACUGCUCCAUCACCUGGAGCAUUCAGUUGACCUCAGCAUCGACAGCUGGAGCAACA
......(((((.....((((((..........))))))..))))).....(((((((.....)))))))....((((.(..((((.......))))..))))). (-29.61 = -30.42 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:46 2006