| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,405,608 – 15,405,738 |
| Length | 130 |
| Max. P | 0.758714 |
| Location | 15,405,608 – 15,405,705 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 82.28 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -16.65 |
| Energy contribution | -16.15 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15405608 97 + 23771897 UGUCCUCGUCCAUGGCGAGCGUUAUCCUUCCCUGCCCGGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUUCGUCUAC---GCU---GUCGUCCUCGGCUAUU .....(((...(((((.(((((...(.....((((((((((....)))))))))).(((((....)))))..)...))---)))---)))))...)))..... ( -28.30) >DroSec_CAF1 134523 85 + 1 UGUCCUUGUCCAUGGCAAGCGUUAUCCUUCCCUGGCCAGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGC------------------GUCCUCGGCUAUU ....(((((.....))))).............(((((((((....))))((((.(((((((....)))))))------------------))))..))))).. ( -22.60) >DroSim_CAF1 136928 85 + 1 UGUCCUUGUGCAUGGCGAGCGUUAUCCUUCCCUGGCCAGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGC------------------GUCCUUGGCUAUU .(((...((((.((((.((.(........).)).)))))))).......((((.(((((((....)))))))------------------))))..))).... ( -23.30) >DroEre_CAF1 135620 97 + 1 UGUCCUUGUCCAUGGCGAGCGUUAUCCUUCCCUGCCCGACUUUAUUGUUGGCCAGUAAUUUUCAUAAAUUGCGUCUCC---GCU---GUCGUCCUCGGCCAUU ...........(((((.((((...........((.(((((......))))).))(((((((....))))))).....)---)))---..((....))))))). ( -22.70) >DroYak_CAF1 138848 97 + 1 UGUCCUUGUCCAUGGCGAGCGUUAUCCUUCCCUGCCCGACAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGCGUCUCC---GCC---GUCGUCCUCGGCUAUU .(((...(..((((((((((((.........((((((((((....)))))))))).(((((....)))))))).)).)---)))---)).)..)..))).... ( -32.20) >DroAna_CAF1 279784 102 + 1 UGUCCUUGUACAUGGUGAACGUUAUCCUUCC-UCCUCGCCAUUACUGGUGUGGAGUAAUUUUCAUAAAUUGCGUCGCCUUCGUGGUCGUCCUCCUCGGCUAUU .............(((((.(((........(-(((.(((((....))))).)))).(((((....)))))))))))))...(((((((.......))))))). ( -28.10) >consensus UGUCCUUGUCCAUGGCGAGCGUUAUCCUUCCCUGCCCGGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGCGUCUCC___GC____GUCGUCCUCGGCUAUU ...........((((((((.............((.((((((....)))))).))(((((((....))))))).....................))).))))). (-16.65 = -16.15 + -0.50)
| Location | 15,405,640 – 15,405,738 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.41 |
| Mean single sequence MFE | -27.32 |
| Consensus MFE | -21.52 |
| Energy contribution | -21.25 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.758714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15405640 98 + 23771897 UGCCCGGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUUCGUCUAC---GCU---GUCGUCCUCGGCUAUUAGCGUUAACAUCUAAAUGUCGCCGUUGAAAGCA (((((((((....)))))))))....(((((.........((..((---(((---((((....))))....)))))..)).....((((....))))))))).. ( -27.20) >DroSec_CAF1 134555 86 + 1 UGGCCAGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGC------------------GUCCUCGGCUAUUAGCGUUAACAUCUAAAUGUCGCCGUUGAAAGCA ((.((((((....)))))).))(((((((....)))))))------------------.......(((.((((((...((((....))))...)))))).))). ( -25.60) >DroSim_CAF1 136960 86 + 1 UGGCCAGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGC------------------GUCCUUGGCUAUUAGCGUUAACAUCUAAAUGUCGCCGUUGAAAGCA ((.((((((....)))))).))(((((((....)))))))------------------.......(((.((((((...((((....))))...)))))).))). ( -25.60) >DroEre_CAF1 135652 98 + 1 UGCCCGACUUUAUUGUUGGCCAGUAAUUUUCAUAAAUUGCGUCUCC---GCU---GUCGUCCUCGGCCAUUAGCGUUAACAUCUAAAUGUCGCCGUUGAAAGCA ((.(((((......))))).))(((((((....)))))))......---(((---....((..((((.....(((((........))))).))))..)).))). ( -23.90) >DroYak_CAF1 138880 98 + 1 UGCCCGACAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGCGUCUCC---GCC---GUCGUCCUCGGCUAUUAGCGUUUACAUCUAAAUGUCGCCGUUGAAAGCA (((((((((....)))))))))(((((((....)))))))......---((.---.(((....((((.....(((((((....))))))).)))).)))..)). ( -32.60) >DroAna_CAF1 279815 104 + 1 UCCUCGCCAUUACUGGUGUGGAGUAAUUUUCAUAAAUUGCGUCGCCUUCGUGGUCGUCCUCCUCGGCUAUUAGCGUUAACAUCUAAAUGUCGCCGUUGAAAGCA (((.(((((....))))).)))(((((((....)))))))...((.((((((((((.......))))))).((((...((((....))))...))))))).)). ( -29.00) >consensus UGCCCGGCAUUAUUGUUGGGCAGUAAUUUUCAUAAAUUGCGUCUCC___GC____GUCGUCCUCGGCUAUUAGCGUUAACAUCUAAAUGUCGCCGUUGAAAGCA ((.((((((....)))))).))(((((((....))))))).........................(((.((((((...((((....))))...)))))).))). (-21.52 = -21.25 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:45 2006