| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,404,551 – 15,404,648 |
| Length | 97 |
| Max. P | 0.568630 |
| Location | 15,404,551 – 15,404,648 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 73.20 |
| Mean single sequence MFE | -26.17 |
| Consensus MFE | -10.23 |
| Energy contribution | -10.12 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15404551 97 - 23771897 ------GCAGCAGGAUAGUAUGCUAUGAAAAUUGCAUUGUACA----CUCUUUUUUUUUCAUUUUAAUG------GUUCCUGCAGAGUUGCGUAAGUGAAAACUUGCCACACA ------...((((((.(.(((...(((((((.......(....----).......)))))))....)))------.)))))))...((((.((((((....)))))))).)). ( -23.74) >DroSim_CAF1 135875 99 - 1 ---GCAGCAGCAGGAUAGUAUGCUAUGAAAAUUGCAUUGUACA----CUCUUUU-UUUUCAUUUUAAUG------GCUGCUGCAGAGUUGCGUAAGUGAAAACUUGCCACACA ---((((((((((..((..((((.((....)).))))..))..----)).....-....(((....)))------))))))))...((((.((((((....)))))))).)). ( -30.60) >DroWil_CAF1 141452 85 - 1 ---GUUG-CGCAAGAAAGUAUGCUAUGAAAAUUGCAUUGUACU------------------UUUUAAUG------GCCAGAAGAGAGUUGCGUAAGUGAAAACUUGCCACACA ---.(((-.((.(((((((((((.((....)).)))...))))------------------))))....------)))))......((((.((((((....)))))))).)). ( -19.90) >DroYak_CAF1 137780 102 - 1 GCAGCAGCAGCACGAUAGUAUCCUAUGAAAAUUGCAUUGUACA----CCCUUUU-UUUUCAUUUUAAUG------GCCGCUGCAGAGUUGCGUAAGUGAAAACUUGCCACACA (((((.((((((((((.(((............))))))))...----.......-...((((....)))------)..)))))...)))))((((((....))))))...... ( -25.40) >DroAna_CAF1 278721 91 - 1 ----GCGACGGGGAAAAGUAUGCUAUGAAAAUUACAUUGUGCA----UUCUUUU--------UUUAAUG------GCCGCAGCGCAGUUGCGUAAGUGAAAACUUGCCACACA ----(((((.((((((((.((((.(((.......)))...)))----).)))))--------)))..((------((....)).)))))))((((((....))))))...... ( -25.00) >DroPer_CAF1 131469 110 - 1 CC-CCAGGGCCA-GGGAGCACCGCAUGAAAACUGCAUUGUACUUCCCCCCUCCC-CCUGCAUUUUAAUGCACGCAGCAGCAGCAGAGCUGCGUAAGUGAAAACUUGCCACACA ..-..((((...-(((((((..((((....).)))..)))...))))))))...-..(((((....)))))....(((((......)))))((((((....))))))...... ( -32.40) >consensus ___GCAGCAGCAGGAUAGUAUGCUAUGAAAAUUGCAUUGUACA____CUCUUUU_UUUUCAUUUUAAUG______GCCGCAGCAGAGUUGCGUAAGUGAAAACUUGCCACACA .................((((...(((.......))).)))).................................((.((......)).))((((((....))))))...... (-10.23 = -10.12 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:43 2006