| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,400,486 – 15,400,587 |
| Length | 101 |
| Max. P | 0.894151 |
| Location | 15,400,486 – 15,400,587 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 75.25 |
| Mean single sequence MFE | -27.81 |
| Consensus MFE | -14.08 |
| Energy contribution | -14.75 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15400486 101 - 23771897 ---------GGACGAAG-AGGUACUCGCGCCAUAAAA-AUGUUGCAUACUUUGCGGCAUUAAACGUGAGUUUUAUGCACAGAAAUU-UAUGGUGAUGCAGUUAAGGAGGCGGA----- ---------...((...-....(((((((((((((((-((((((((.....)))))))))((((....))))............))-))))))).)).)))........))..----- ( -27.76) >DroEre_CAF1 129946 102 - 1 ---------GGACGAAG-AGGUACUCGCACCAUAAAAAGUGCUGCAUACUUUGCGGCAUUAAACGUGAGUUUUAUGCACAGAAAUU-UAUGGUGAUGCAGUUAAGGAGGCGGA----- ---------...((...-....((((((((((((((.(((((((((.....)))))))))((((....))))............))-))))))).)).)))........))..----- ( -30.66) >DroYak_CAF1 133393 102 - 1 ---------GGACGAAG-AGGUACUGGCACCAUAAAAAAUGCUGCAUACUUUGCGGCAUUAAACGUGAGUUUUAUGCACAGAAAUU-UAUGGUGAUGCAGUUAAGGAGGCGGA----- ---------...((...-....((((.(((((((((.(((((((((.....)))))))))((((....))))............))-)))))))...))))........))..----- ( -32.46) >DroMoj_CAF1 125782 112 - 1 UUUGUAUUUGGUCCAAGUGCGAGCGGGCAUCAUAAAAAGCGUUGCACACUUUGCGGCAUUAAACGUGAGUUUUAUGCACAAAAAUUAUAUGGCAUUGCAGUUAAGGAG-CGAA----- ......((((.(((((.(((((...(.(((.((((...(((..(....)..))).((((.((((....)))).)))).......))))))).).))))).))..))).-))))----- ( -29.40) >DroAna_CAF1 274692 87 - 1 -----------------------------CCAUAAAAAAUGCUGCAUACUUUGCGGCAUUAAACGUGAGUUUUAUGCACAGAAAUU-UAUGGGGAUGCAGUUAAAGUG-CGGAAAAGA -----------------------------(((((((.(((((((((.....)))))))))((((....))))............))-)))))...((((.......))-))....... ( -24.60) >DroPer_CAF1 128308 99 - 1 ---------CGAGAUGG-AGAUGC-GACCCCACAAAAAGCGUUACAUACUUUGCGGCAUUAAACGUGAAUUUUAUGCUGGCAAAUU-UAUGUGAAUGCAGUUUA--AGGCGGC----- ---------........-......-..((((..(((..((((((((((.((((((((((.(((......))).))))).)))))..-)))))).))))..))).--.)).)).----- ( -22.00) >consensus _________GGACGAAG_AGGUACUGGCACCAUAAAAAAUGCUGCAUACUUUGCGGCAUUAAACGUGAGUUUUAUGCACAGAAAUU_UAUGGUGAUGCAGUUAAGGAGGCGGA_____ ............................((((((...(((((((((.....)))))))))((((....))))...............))))))......................... (-14.08 = -14.75 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:41 2006