Locus 5614

Sequence ID 3L_DroMel_CAF1
Location 15,398,734 – 15,398,832
Length 98
Max. P 0.536869
window8872

overview

Window 2

Location 15,398,734 – 15,398,832
Length 98
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 84.46
Mean single sequence MFE -25.58
Consensus MFE -18.57
Energy contribution -20.02
Covariance contribution 1.45
Combinations/Pair 1.10
Mean z-score -1.94
Structure conservation index 0.73
SVM decision value 0.01
SVM RNA-class probability 0.536869
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15398734 98 + 23771897
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCUGCCUUAUUUUCGCGGCAC-------------UGGCAAUGUUGCUGCAGGUCCUGAAAUGGAA------AUG
..((((((((((..(((((((.......))))))).....((((((((.........)))))..-------------.((((....))))))).....))))))))))------... ( -26.30)
>DroSec_CAF1 127681 98 + 1
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCUGCCUUAUUUUCGCGGCAC-------------UGGCAAUGUUGCUGCAGGUCCUGAAAUGGAA------AUG
..((((((((((..(((((((.......))))))).....((((((((.........)))))..-------------.((((....))))))).....))))))))))------... ( -26.30)
>DroSim_CAF1 129940 98 + 1
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCUGCCUUAUUUUCGCGGCAC-------------UGGCAAUGUUGCUGCAGGUCCUGAAAUGGAA------AUG
..((((((((((..(((((((.......))))))).....((((((((.........)))))..-------------.((((....))))))).....))))))))))------... ( -26.30)
>DroEre_CAF1 128423 104 + 1
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCUGCCUUAUUUUCGCGGCAA-------------UGGCAGUGUUGCUGCAGGUCCUGAAAUGGGAAUGGAAAUG
..(((((((((..((((....(((((............(((..(((((.........))))).)-------------))((((.....))))....))))))))))))))))))... ( -28.50)
>DroYak_CAF1 131684 104 + 1
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCUGCCUUAUUUUCGCGGCAG-------------UGGCAACGUUGCUGCAGGUCCUGAAAUGGAAAUGGAAAUG
..(((((((((..(((((((...((((...................)))).......(((((((-------------((....)))))))))......))))))))))))))))... ( -30.61)
>DroAna_CAF1 273162 105 + 1
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCAGCCUUAUUUUCGGCAUAUUCGCCAAUUCACGUUGCAGUGUUGCCACGG------UACUGGUC------CCG
.....((((.(((((((((((.......)))))))......(((..(((........))).....)))........)))).))))..((((...------...)))).------... ( -15.50)
>consensus
AAUUCCAUUUCAACAUUUUAAUUAGGUUUUAAAAUUUUCAUGCGCUGCCUUAUUUUCGCGGCAC_____________UGGCAAUGUUGCUGCAGGUCCUGAAAUGGAA______AUG
..((((((((((..(((((((.......))))))).....((((((((.........)))))................((((....))))))).....))))))))))......... (-18.57 = -20.02 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:40 2006