| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,388,901 – 15,388,998 |
| Length | 97 |
| Max. P | 0.889600 |
| Location | 15,388,901 – 15,388,998 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 86.16 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -25.17 |
| Energy contribution | -25.17 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.889600 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15388901 97 + 23771897 ---------GGAGUUGGAGUGCGGAGUCUGGAGUCAUCAUCUG-GUUCUCCAGCUAA-AACGGCACAAGUGAUGCCACUUAAGUCAUUCAAAAUCUAGCAAUUCCAAG ---------(((((((..((((.(((.((((((..(((....)-)).))))))))..-..).))))(((((....)))))..................)))))))... ( -30.20) >DroSec_CAF1 120481 96 + 1 ---------GGAGUUGGAGUACGGAGUCUGGAGUCAUCAUCUGGGUUCUCCAGCUAA-AACGGCACAAGUGCUGCCACUUAAGCCAUUUAAAAUCUAACAAUUC-AA- ---------...((((((((....((.((((((...((....))...))))))))..-.))(((..(((((....)))))..)))........)))))).....-..- ( -27.20) >DroSim_CAF1 122254 97 + 1 ---------GGAGUUGGAGUGCGGAGUCUGGAGUCAUCAUCUG-GUUCUCCAGCUAAAAACGGCACAAGUGCUGCCACUUAAGCCAUUUAAAAUCUAACAAUUC-AAG ---------...((((((((....((.((((((..(((....)-)).))))))))....))(((..(((((....)))))..)))........)))))).....-... ( -28.50) >DroYak_CAF1 124423 106 + 1 GUUGGAGUUGGAGUUGGAGUGCGGCGUCUGGAGUCAUCAUCUG-GUUUUCCAGCUGG-AACGGCACAAGUGCUGCCACUUUAGCCAUCUAAAGUCUAACAGCUCCAUG ((((((.(((((((((((((((((((..((..(((.(((.(((-(....)))).)))-...))).))..))))).)))))))))..)))))..))))))......... ( -38.90) >consensus _________GGAGUUGGAGUGCGGAGUCUGGAGUCAUCAUCUG_GUUCUCCAGCUAA_AACGGCACAAGUGCUGCCACUUAAGCCAUUUAAAAUCUAACAAUUC_AAG .........(((((((..((....((.((((((..............))))))))....))(((..(((((....)))))..))).............)))))))... (-25.17 = -25.17 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:37 2006