| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,385,158 – 15,385,270 |
| Length | 112 |
| Max. P | 0.500000 |
| Location | 15,385,158 – 15,385,270 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.15 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -19.53 |
| Energy contribution | -19.28 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15385158 112 + 23771897 UAAUGUUGUUUAAUGUUUCUCUCAGUGCCAUAGUUUGUUUUCGAUGGGGAGAGGAUACUUAGAAGUAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA ...................(((((((..((..((((((..((((((..(.(((((((((....))))))))).)..))))))))))))...)))))))))............ ( -28.10) >DroSec_CAF1 116934 112 + 1 UAAAGCUGUUUAAAGUUUCUCUCAGUGCCAUAGUUUGUUUUCGAUGGGGAGAGGAUACUUAGAAGUAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA ..(((((......))))).(((((((..((..((((((..((((((..(.(((((((((....))))))))).)..))))))))))))...)))))))))............ ( -30.10) >DroSim_CAF1 119132 112 + 1 AAAAGCUGUUUAAAGUUUCUCUCAGUGCCAUAGUUUGUUUUCGAUGGGUAGAGGAUACUUAGAAGUAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA ..(((((......))))).(((((((..((..((((((..((((((.((.(((((((((....)))))))))))..))))))))))))...)))))))))............ ( -29.30) >DroEre_CAF1 117768 97 + 1 ---------------UUUUUCUCAGUGCCAUAGUUUGUUUUCGAUGUGGAGGGUGUACUUAGAAGUAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA ---------------...((((((((..((..((((((..(((((((...(((.(((((....))))).)))...)))))))))))))...))))))))))........... ( -26.60) >DroYak_CAF1 120509 111 + 1 -GAUGCCGCUUAAACUUUUUCUCAGUGCCAUAGUUUGUUUUCGAUGUGGAGGGGAUACUUAGAAGUAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA -............((...((((((((..((..((((((..(((((((...(..((((((....))))))..)...)))))))))))))...)))))))))).))........ ( -31.20) >DroAna_CAF1 263214 107 + 1 UUAUUUUGU-CAAAAAUUCUUCAAGUGCAAAUA--UUUUUCAGAAG--UGGGGGAUACUUAGAACCAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA .((((((((-((((..((((((((.(((...((--(((..((....--))..)))))....(((.....)))...)))))))).)))..))))))..))))))......... ( -20.00) >consensus UAAUGCUGUUUAAAGUUUCUCUCAGUGCCAUAGUUUGUUUUCGAUGGGGAGAGGAUACUUAGAAGUAUUUUCGCAGCAUUGAGCGAACGUUUGAUUGAGAAUGUAUUGUAUA .................((.((((((((............((......))(((((((((....)))))))))...)))))))).))((((((......))))))........ (-19.53 = -19.28 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:36 2006