Locus 5610

Sequence ID 3L_DroMel_CAF1
Location 15,381,902 – 15,381,997
Length 95
Max. P 0.681574
window8867

overview

Window 7

Location 15,381,902 – 15,381,997
Length 95
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.02
Mean single sequence MFE -33.28
Consensus MFE -17.06
Energy contribution -17.75
Covariance contribution 0.69
Combinations/Pair 1.12
Mean z-score -2.08
Structure conservation index 0.51
SVM decision value 0.31
SVM RNA-class probability 0.681574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15381902 95 + 23771897
GUCCGUGCGUCAGGACGUCACAGUCGUCACCAUGUGGUUGCGUC--UGUGACAGUGGAAAUAAUUCU---GGCGAACGGCGCAACAGUGGUUGAAAAUGG
(.((((.((((((((.(((((((.(((.(((....))).))).)--)))))).((....))..))))---)))).))))).((((....))))....... ( -39.40)
>DroPse_CAF1 114041 88 + 1
GUCCGUGCGUCAGGACGUCACAGUCGUCACCAUGUGGUUACGUC--UGUGACAGUGGAAUUAAUGCC----ACGAAU-----UACAGUGGAAU-CAAUAC
((((........))))(((((((.(((.(((....))).))).)--)))))).............((----((....-----....))))...-...... ( -32.10)
>DroWil_CAF1 121585 89 + 1
GUCCGUGCGUCAGAAUGUCACAGU---CACCAUGUGGUUACGUCUCUCUGACAGCGGAAAUGUCAGU---GGCGAGG----GCACAGUGGAAC-GAACAC
((.(((((((....))).)))...---..(((((((.(..((((...((((((.......)))))).---))))..)----.)))).)))...-).)).. ( -26.10)
>DroYak_CAF1 117066 94 + 1
GUCCGUGCGUCAGGACGUCACAGUCGUCACCAUGUGGUAGCGUC--UGUGACAGUGGAAAUAAUUCU---GGCGAACGGCGCCACAGUGGUUC-GAAUGG
(.((((.((((((((.(((((((.((..(((....)))..)).)--)))))).((....))..))))---)))).)))))(((.....)))..-...... ( -39.20)
>DroAna_CAF1 260349 98 + 1
GUCCGUGCGUCAGGACGUCACAGUCGUCACCAUGUGGUUACGUC--UCUGACAGUGGAAAUAAUGCCGCCGGAGAACGCCGGAUCAGUGGUAGAAAAUGG
(((((.(((((.....((((.((.(((.(((....))).))).)--).)))).((((........))))....).)))))))))................ ( -30.80)
>DroPer_CAF1 113256 88 + 1
GUCCGUGCGUCAGGACGUCACAGUCGUCACCAUGUGGUUACGUC--UGUGACAGUGGAAUUAAUGCC----ACGAAU-----UACAGUGGAAU-CAAUAC
((((........))))(((((((.(((.(((....))).))).)--)))))).............((----((....-----....))))...-...... ( -32.10)
>consensus
GUCCGUGCGUCAGGACGUCACAGUCGUCACCAUGUGGUUACGUC__UGUGACAGUGGAAAUAAUGCC___GGCGAAC_____AACAGUGGAAC_AAAUAC
((((........))))((((((..(((.(((....))).)))....))))))................................................ (-17.06 = -17.75 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:35 2006