Locus 5607

Sequence ID 3L_DroMel_CAF1
Location 15,379,433 – 15,379,552
Length 119
Max. P 0.712995
window8863

overview

Window 3

Location 15,379,433 – 15,379,552
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -16.81
Consensus MFE -7.62
Energy contribution -7.46
Covariance contribution -0.16
Combinations/Pair 1.25
Mean z-score -2.24
Structure conservation index 0.45
SVM decision value 0.38
SVM RNA-class probability 0.712995
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15379433 119 - 23771897
UUAUUUUUGUAUAAUAGACACACCAAUUAUUCACAUUCUAGCAUGUUUUCCUUCCAUACGAAAAAAAAAUAUCUCUUUUGAGGUAUUAUAAAUUUCCCAAAAAACUGCAUACAAAAUUA
....((((((((..((((..................))))(((.(((((..(((.....))).....((((((((....)))))))).............))))))))))))))))... ( -17.57)
>DroSec_CAF1 111228 118 - 1
UAAUUUUUGUAUAAUAGGCACACCAAAUAUUCACAUUCUAGCAUAUUUUCCUCCCAUCCGAACA-CAAAUAUUUCUUUUGAGGUAUUAUAAAUUUCCCCAAAAACUGCAUACAAAAUUA
....((((((((....((....))................(((........((......))...-..((((((((....))))))))..................)))))))))))... ( -12.70)
>DroSim_CAF1 113630 118 - 1
UUAUCUUUGUAUAAUUGGCACACCAAAUAUUCACAUUCCAGCAUGUUUUCCUUCCAUCCGAACA-CAAAUAUUUCUUUUGAGGUAUUAUAAAUUUCCCCAAAAACUGCAUACAAAAUUA
.....(((((((..((((....))))..............(((.(((((..(((.....)))..-..((((((((....)))))))).............))))))))))))))).... ( -16.90)
>DroEre_CAF1 111997 108 - 1
---UCCUAGUGUAAUAGGCACACUAGAACUU------CUUGCACUUUUUCAUUGCAUCUGAAAA-CAAAUAUUUCGUUUGAGGUAUCAUAAAUUUGCCCAA-AACUGCAUACAAAAUUA
---..(((((((.......))))))).....------..((((..((((((.......))))))-..........((((..((((.........))))..)-))))))).......... ( -19.10)
>DroYak_CAF1 114519 106 - 1
---UUAUUGUAUAAUACGAACACGAGAAUUU------CUU---CUUUCUCGUUGCAUCUGAAAA-CAAAUAUUUCUUUUGAGGUAUUAUAAAUUUCCCCAAAAACUGCAUACAAAAUUA
---...((((((.........(((((((...------...---..))))))).(((..((....-))((((((((....))))))))..................)))))))))..... ( -17.80)
>consensus
U_AUUUUUGUAUAAUAGGCACACCAAAUAUUCACAUUCUAGCAUGUUUUCCUUCCAUCCGAAAA_CAAAUAUUUCUUUUGAGGUAUUAUAAAUUUCCCCAAAAACUGCAUACAAAAUUA
......((((((....((....))...........................................((((((((....)))))))).....................))))))..... ( -7.62 =  -7.46 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:31 2006