Locus 5606

Sequence ID 3L_DroMel_CAF1
Location 15,375,756 – 15,375,869
Length 113
Max. P 0.896084
window8862

overview

Window 2

Location 15,375,756 – 15,375,869
Length 113
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 79.08
Mean single sequence MFE -24.42
Consensus MFE -12.53
Energy contribution -13.50
Covariance contribution 0.97
Combinations/Pair 1.10
Mean z-score -2.51
Structure conservation index 0.51
SVM decision value 0.99
SVM RNA-class probability 0.896084
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15375756 113 - 23771897
UUAUAAUUAUUUCUCUUAAUAU-CAGCUUUAUUUCGUGAUCCGAUUAUCCUAAAAAUCAGUCACGCUGUCAUCUCCUCUUUUUCGGUGACCAUUUUUGGGGAUAUAUCAGCAUU
......................-............(((((..((((........)))).)))))((((..((.(((((......(....).......))))).))..))))... ( -21.32)
>DroSec_CAF1 107602 112 - 1
UUAUUAUUUCUUCUCUUAAUAU-CAGCUUUAUUUUGUGAUCCGAUUGUCCUGA-AAUCAUUCACGCUGUCAUCUCCUCUUUUUCGGUGACCGUUUUUGGGGAUAUAUCAGCAUU
......................-............((((...((((.......-))))..))))((((..((.(((((.....(((...))).....))))).))..))))... ( -22.10)
>DroSim_CAF1 109963 113 - 1
UUAUUAUUAUUUCUCUUUAUAU-CAGCAUUAUUUCGUGUUCCGAUUGUCCUGAAAAUCAGUCACGCUGUCAUCUCCUCUUUUUCGGUAACCGUUUUUGGGGAUAUAUCAGCAUU
......................-............(((..(.((((........)))).).)))((((..((.(((((.....(((...))).....))))).))..))))... ( -21.00)
>DroEre_CAF1 108406 110 - 1
UUA---ACAUUUCCCUUGAUAU-CAGCACUCUUCCGUGAUCUGAUUGUCAUGAAAAUCAGUCACGCUGUCAUCUCUUCUUUUUGGGUGCCCACUUUUGGGUAUAUAUCAGCAUU
...---.........(((((((-((((........((((.((((((........)))))))))))))).................(((((((....)))))))))))))).... ( -25.80)
>DroYak_CAF1 110868 110 - 1
UUA---UUAUUUCUCUUAAUAC-CAGCAUUCUACCGUGAUCUGAUUGCCAUGAAAAUCAGUCACGCUGUCAUCUCCUCUUUCUGGGUGCCCAUUUUUGGGGAUAUAUCAGCAUU
...---................-............((((.((((((........))))))))))((((..((.(((((....(((....))).....))))).))..))))... ( -28.50)
>DroAna_CAF1 254774 103 - 1
AUGGAAU---UU---UUAAUAGACAGU----UCUCGUGAUCUGUUUGUCUUGUAAUUCCAUCACUGAGCCAUCUCUUGGU-UGCGGUGCCCAUUUUCGAGGAUAUAUCAGCAUU
(((((((---(.---...((((((((.----((....)).)))))))).....))))))))((((((((((.....))))-).))))).((........))............. ( -27.80)
>consensus
UUAU_AUUAUUUCUCUUAAUAU_CAGCAUUAUUUCGUGAUCCGAUUGUCCUGAAAAUCAGUCACGCUGUCAUCUCCUCUUUUUCGGUGACCAUUUUUGGGGAUAUAUCAGCAUU
...................................((((...((((........))))..))))((((..((.(((((......((...))......))))).))..))))... (-12.53 = -13.50 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:30 2006