| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,375,291 – 15,375,392 |
| Length | 101 |
| Max. P | 0.712557 |
| Location | 15,375,291 – 15,375,392 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 87.52 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -16.30 |
| Energy contribution | -16.54 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.712557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15375291 101 + 23771897 ACAAUAGAAACCCAAUUUUACUCUUCAAUUUUAUUUUGGCUCAUCGUUGGGGCAAAACAAAAAUGAAAUGGUCUGCAGAUAUUUCGAAAGCCAUUGACACC ........................(((.((((.(((((.((((....)))).))))).)))).)))(((((.((...((....))...)))))))...... ( -19.40) >DroSec_CAF1 107135 101 + 1 ACAGUCGAAAGCCACUUUUUUUCUUCAAUUUUAUUUUGGCUCAUCGUUGGGGCAAAACAAAAAUGAAAUGGUCUGCAGAUAUUUCGACAGCCAUUGACACC ...(((((...............((((.((((.(((((.((((....)))).))))).)))).)))).(((.(((..((....))..)))))))))))... ( -26.30) >DroSim_CAF1 109492 101 + 1 ACUGUCGAAAACCACUUUUUUUCUUCAAUUUUAUUUUGGCUCAUCGUUGGGGCAAAACAAAAAUGAAAUGGUCUGCAGAUAUUUCGAAAGCCAUUGACACC ..(((((((((.......))))).(((.((((.(((((.((((....)))).))))).)))).)))(((((.((...((....))...))))))))))).. ( -23.80) >DroEre_CAF1 107957 86 + 1 ---------------UGUUUCUCUUCAAUUUUAUUUUGGCUCAUCGUUGGGUAAAAACAAAAAUGAAAUGGUCUGCAGAUAUUUUGAAAGCCAUUGACACC ---------------((((.....(((.((((.((((.(((((....))))).)))).)))).)))((((((...((((...))))...)))))))))).. ( -16.40) >DroYak_CAF1 110400 101 + 1 ACAGUCCAAAUCCUGUUUUUCUCUUCAAUUUUAUUUUGACUCAUCGCUGGGGAAAAACAAAAAUGAAAUGGUCUGCAGAUAUUUCGAAAGCCAUUGACACC ...(((.......(((((((((((((((.......)))).........))))))))))).......(((((.((...((....))...))))))))))... ( -20.90) >consensus ACAGUCGAAA_CCACUUUUUCUCUUCAAUUUUAUUUUGGCUCAUCGUUGGGGCAAAACAAAAAUGAAAUGGUCUGCAGAUAUUUCGAAAGCCAUUGACACC ........................(((.((((.(((((.((((....)))).))))).)))).)))(((((.((...((....))...)))))))...... (-16.30 = -16.54 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:29 2006