Locus 5604

Sequence ID 3L_DroMel_CAF1
Location 15,371,396 – 15,371,491
Length 95
Max. P 0.939161
window8860

overview

Window 0

Location 15,371,396 – 15,371,491
Length 95
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.40
Mean single sequence MFE -24.73
Consensus MFE -16.51
Energy contribution -16.77
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.67
SVM decision value 1.30
SVM RNA-class probability 0.939161
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15371396 95 - 23771897
------------UCGCCCACCAUCAACAUUCUGUUACUGGAGGUCAUUUUUGUUCAUAGUUCAUUACGAUUGAACUGCCACAAAGGUCUGU-AG-UUCCC--CAAACAUGU
------------..(.((.(((..(((.....)))..))).)).)((((((((...(((((((.......)))))))..))))))))....-..-.....--......... ( -17.40)
>DroVir_CAF1 100698 104 - 1
UUGUUGCAGCUUUUGUCCACCAACAGCAUUC---GCCUGGAGGUCAUUUUUGUGCAUAGUUCAUUACGAUUGAACUGCCACAAAGGUCCUU-UU---GCACACACACAUAG
.((((((((((.(((.....))).)))....---....(((((..(((((((((..(((((((.......))))))).)))))))))))))-))---))).)))....... ( -26.50)
>DroWil_CAF1 110769 93 - 1
------------UUGUCCACCAAUGGCAAU--GCGCCUGGAGGUCAUUUUUGUGCAUAGUUCAUUACGAUUGAACUGCCACAAAGGUCCUUUUGCUCUUC--CACACAU--
------------..(.((.(((..(((...--..)))))).)).)(((((((((..(((((((.......))))))).))))))))).............--.......-- ( -23.50)
>DroYak_CAF1 106097 103 - 1
----UGGUGAGUUCGCCCACCAUCAACAUUCUGUUACUGGAGGUCAUUUUUGUGCAUAGUUCAUUACGAUUGAACUGCCACAAAGGUCCCU-AG-UUCCC--CAAACAUGU
----(((((.(....).)))))..........(..(((((.((..(((((((((..(((((((.......))))))).)))))))))))))-))-)..).--......... ( -27.40)
>DroAna_CAF1 241944 95 - 1
----G-------UUGUUCACCAACAUCGUCCUGCGCCUGGAGGUCAUUUUUGUGCAUAGUUCAUUACGAUUGAACUGGCACAAAGGUCCAU--U-UUCCA--CAAACAUGU
----(-------(((.....)))).............((((((..((((((((((.(((((((.......)))))))))))))))))....--)-)))))--......... ( -25.90)
>DroPer_CAF1 102566 92 - 1
------------U-GUCCACCAGCACCGUGCUGG-CCUGGAGGUCAUUUUUGUGCAUAGUUCAUUACGAUUGAACUGCCACAAAGGUCCCU--U-UUCCG--CACACACAU
------------.-.(((((((((.....)))))-..))))((..(((((((((..(((((((.......))))))).))))))))).)).--.-.....--......... ( -27.70)
>consensus
____________UUGUCCACCAACAACAUUCUGCGCCUGGAGGUCAUUUUUGUGCAUAGUUCAUUACGAUUGAACUGCCACAAAGGUCCCU__G_UUCCC__CAAACAUGU
..............(.((.(((...((.....))...))).)).)(((((((((..(((((((.......))))))).)))))))))........................ (-16.51 = -16.77 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:28 2006