| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,364,804 – 15,364,914 |
| Length | 110 |
| Max. P | 0.545034 |
| Location | 15,364,804 – 15,364,914 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -14.28 |
| Energy contribution | -14.08 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545034 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15364804 110 + 23771897 CUAAAUGUAGGUAAAGGAGCCAAAACGCUUAACAAAUUAAUAAAUAACAUUCUUGUUGUGGUUGCUGUACUAGUGAAAGCCACAAACAAAUCUUAGAAAUACCCAACUAA .........((((...((((......))))......................(((((((((((((((...))))...)))))).)))))..........))))....... ( -17.40) >DroSec_CAF1 96583 110 + 1 CUAAAUGUAGGUAAAGGAGCCAAAACGCUUAACAAAUUAAUAAAUAACAGUCUUGUUGUGGUUACCGUACUAGCGAAAGCCGCAAACAAAUCUUAGAAAUACCCAACUAA .........((((...((((......))))..................((..(((((((((((..(((....)))..)))))).)))))..))......))))....... ( -20.40) >DroSim_CAF1 98661 110 + 1 CUAAAUGUAGGUAAAGGAGCCAAAACGCUUAACAAAUUAAUAAAUAACAUUCUUGUUGUGGUUGCUGUACUAGCGAAAGCCACAAACAAAUCUUAGAAAUACCCAACUAA .........((((...((((......))))......................(((((((((((..(((....)))..)))))).)))))..........))))....... ( -19.40) >DroEre_CAF1 96501 110 + 1 UUAAAUGUAGGUAAAGGAGACAAAACGCUUAACAAAUUAAUAAAUAGCAUUCUAAUUGUGGUUGCUGUACUAGCGAAAACCACAAACAAAUCUCAGAAAUACCUAACAAA .....((((((((...((((......(((................))).......((((((((..(((....)))..)))))))).....)))).....))))).))).. ( -23.79) >DroYak_CAF1 99726 110 + 1 UCAAAUGUAGGUAAAGGAGACAAAACGCUUAACAAAUUAAUAAAUGACAUUCUUCUUGUGGUAGCUGUACUAGUGAAAACCACAAACAAAUCCUAGAAAUACCUAACAAA .....((((((((..(....)..................................(((((((.((((...))))....)))))))..............))))).))).. ( -18.00) >consensus CUAAAUGUAGGUAAAGGAGCCAAAACGCUUAACAAAUUAAUAAAUAACAUUCUUGUUGUGGUUGCUGUACUAGCGAAAGCCACAAACAAAUCUUAGAAAUACCCAACUAA .........((((...((((......)))).........................((((((((..((......))..))))))))..............))))....... (-14.28 = -14.08 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:20 2006