Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,355,095 – 15,355,201 |
Length | 106 |
Max. P | 0.786169 |
Location | 15,355,095 – 15,355,201 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.84 |
Mean single sequence MFE | -22.72 |
Consensus MFE | -16.00 |
Energy contribution | -16.88 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -2.65 |
Structure conservation index | 0.70 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15355095 106 - 23771897 CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUCCCCGCCCUCGAUUAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA .........((((((((......))))))))..((((((((((........))))).((..(((((..((..(((......)))...))..)))))))..))))). ( -23.20) >DroSec_CAF1 87054 106 - 1 CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGCAAAAGGGCAUUUUCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA ...(((((.((((((((......))))))))(((((..(((((........)))))....(((......))))))))................)))))........ ( -23.70) >DroSim_CAF1 89036 106 - 1 CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUUCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA .........((((((((......))))))))..((((((((((........)))))..((((((((..((..(((......)))...))..))).)))))))))). ( -24.50) >DroEre_CAF1 87223 103 - 1 CCCGAAAUGCGCUUUCUUC-CCCAGAAAA-GGGGAAAAUGGGCAUUUCCCCACCCUCUUUCCAGUU-UUUUCUGCCUCUCUGCACAUAAUCAAGUUUCAAUUUCCA ...(((((((.(....(((-(((......-))))))...).))))))).............(((..-....)))................................ ( -21.20) >DroYak_CAF1 89908 105 - 1 CCCGAAACACGCUUUCUUCGCCCAGAAAAUGAGGGAAAUGGCCAUUUCCCCACCCUCGUUGAACUU-UUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA ...(((((..((.......)).(((((((((((((...(((........)))))))))))(((...-..))).....)))))...........)))))........ ( -21.00) >consensus CCCGAAAUACGUUUUCUUCCCACAGAAAAUGAGGGAAAAGGGCAUUUCCCCGCCCUCGUUGAACUUUUUUUCUGCCUUUCUGCACAUAAUCAAGUUUCAAUUUCCA ...(((((..(((((((......)))))))(((((....(((......))).)))))...............(((......))).........)))))........ (-16.00 = -16.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:15 2006