Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,353,083 – 15,353,185 |
Length | 102 |
Max. P | 0.580308 |
Location | 15,353,083 – 15,353,185 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 79.04 |
Mean single sequence MFE | -19.42 |
Consensus MFE | -10.87 |
Energy contribution | -11.53 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.56 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580308 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15353083 102 - 23771897 -----CU--------UUUUUCGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCUCGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUUUUUCGGUCUUGGCU -----..--------......(((.(((.(....(((((((((((.(((...)))((((.(((((.......))))).))))......))).))))))))....).)))..))). ( -20.40) >DroPse_CAF1 87303 85 - 1 ---------------CUUUUUGUUUGGCGGUUAUGAAAUUUUGCUUGAGCAUCUAGU-AUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUU-------------- ---------------.......((((.(((((((((((...(((....)))......-..(((((.......))))).))))))))))).)))).......-------------- ( -18.70) >DroSec_CAF1 85125 100 - 1 -----CU--------U--UUCGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCUCGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUUUUUCGGUCUUGGCU -----..--------.--...(((.(((.(....(((((((((((.(((...)))((((.(((((.......))))).))))......))).))))))))....).)))..))). ( -20.40) >DroEre_CAF1 85203 99 - 1 ------CU-------UUUUUCGUCUGGCGGUCAUGAAAU-UUGCUUGAGUUGCUCGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUU--UUUCGUUCUUGGCU ------..-------......(((.(((((....((..(-(((((.(((...)))((((.(((((.......))))).))))......))))))..)).--..)))))...))). ( -17.80) >DroAna_CAF1 81073 114 - 1 UCAUUCUUUUUUUCAUUUUUUGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCCAGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAACUUCU-UUUCGGUCUCGGCU .....................(((.(((.(....(((.(((((((..(((((...((((.(((((.......))))).)))).)))))))))))).))).-...).)))..))). ( -20.50) >DroPer_CAF1 86738 85 - 1 ---------------CUUUUUGUUUGGCGGUUAUGAAAUUUUGCUUGAGCAUCUAGU-AUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUU-------------- ---------------.......((((.(((((((((((...(((....)))......-..(((((.......))))).))))))))))).)))).......-------------- ( -18.70) >consensus ______U________UUUUUCGUCUGGCGGUCAUGAAAUUUUGCUUGAGUUGCUAGAAAUUUGCAUUUUUAUUGUAGUUUUCAUAAUUGGCAAAAGUUUUUUUUCGGUCUUGGCU ........................((.((((.((((((..((((..(((.(((.........))).)))....)))).)))))).)))).))....................... (-10.87 = -11.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:14 2006