Locus 5594

Sequence ID 3L_DroMel_CAF1
Location 15,350,544 – 15,350,647
Length 103
Max. P 0.659440
window8844

overview

Window 4

Location 15,350,544 – 15,350,647
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -20.50
Consensus MFE -12.50
Energy contribution -13.82
Covariance contribution 1.32
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.61
SVM decision value 0.26
SVM RNA-class probability 0.659440
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15350544 103 - 23771897
UAUCACUUAUGCAGAAACAUGUUUUUGUAAUUUAUUUUAUUUUUACUCAU-----------------UUAUGAAUUGCUUAAAUUGGAUGCCAUUAAACAUAUCUAAUUGCUGCAUAUCC
.......(((((((............(((((((((...............-----------------..)))))))))...(((((((((..........))))))))).)))))))... ( -18.43)
>DroSec_CAF1 82582 103 - 1
UAUCGCUUAUGCAGAAACAUGUUUUUGUAAUUUAUUUUAUUUUUAGUCAU-----------------UUAUGAAUUGCUUAAAUUGGAUGCCAUUAAACCAAUCUAAUUGCUGCAUAUCC
.......(((((((............(((((((((...............-----------------..)))))))))...((((((((............)))))))).)))))))... ( -18.53)
>DroSim_CAF1 84572 103 - 1
UAUCGCUUAUGCAGAAACAUGUUUUUGUAAUUUAUUUUAUUUUUAGUCAU-----------------UUGUGAAUUGCUUAAAUUGGAUGCCAUUAAACCAAUCUAAUUGCUGCAUAUCC
.......(((((((............(((((((((...............-----------------..)))))))))...((((((((............)))))))).)))))))... ( -18.83)
>DroEre_CAF1 82841 120 - 1
UAACGCUUAUGCUGCAACAUGUUUUUGUAAUUCAUUUUAUUUUCAGUCAUUUCUGUGAACGCCAUUUUUAUAAAUUGCUUAAAUUGGCUGCCAUUAAAUUUAUGUAAUUGCUGCAUAUCC
.......(((((.((((((((..((((............(((.(((......))).))).((((..((((.........)))).))))......))))..)))))...))).)))))... ( -20.50)
>DroYak_CAF1 85318 120 - 1
UAUCGCUUAUGCUAAAACAUGUUUUUGUAAUUUAUUUUAUUUUCGGUCACUUCAGUGAUAGCUAUAUUUAUAAAUUGCUUAAAUUGGAUGCCAUAAAAUGUAUCUAAUUGCUGCAUAUCC
.......(((((..............(((((((((..(((.....(((((....)))))....)))...)))))))))...((((((((((........))))))))))...)))))... ( -26.20)
>consensus
UAUCGCUUAUGCAGAAACAUGUUUUUGUAAUUUAUUUUAUUUUUAGUCAU_________________UUAUGAAUUGCUUAAAUUGGAUGCCAUUAAACCUAUCUAAUUGCUGCAUAUCC
.......(((((((............(((((((((..................................)))))))))...(((((((((..........))))))))).)))))))... (-12.50 = -13.82 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:13 2006