Locus 5593

Sequence ID 3L_DroMel_CAF1
Location 15,343,531 – 15,343,621
Length 90
Max. P 0.999361
window8843

overview

Window 3

Location 15,343,531 – 15,343,621
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 92.11
Mean single sequence MFE -24.30
Consensus MFE -21.82
Energy contribution -22.14
Covariance contribution 0.32
Combinations/Pair 1.12
Mean z-score -2.37
Structure conservation index 0.90
SVM decision value 3.54
SVM RNA-class probability 0.999361
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15343531 90 + 23771897
ACAAUCGAAAGACACAUAUCAAACUAACAUAAUGCGUGGAGAAGCGAGUAUCUCAUUGUUCCACCGCCAUUGGAAGGACACUCCUCAUCC
....((....))..................((((.((((.(.(((((........))))).).))))))))((((((.....)))..))) ( -17.10)
>DroSec_CAF1 75548 89 + 1
ACAAUCGAAAGACACAUAUCAAACUAACAUAAUGCGUGGAGCAGCGAGUCUCUCAUUGUUCCACCGCCAUCGGGAGGACACUCCUCCAC-
....((....)).....................(((((((((((.(((...))).)))))))).))).....(((((.....)))))..- ( -27.90)
>DroSim_CAF1 77506 90 + 1
ACAAUCGAAAGACACAUAUCAAACUAACAUAAUGCGUGGAGCAGCGAGUCUCUCAUUGUUCCACCGCCAUUGGGAGGACACUCCUCAUCC
....((....)).................(((((((((((((((.(((...))).)))))))).)).))))).((((.....)))).... ( -25.70)
>DroEre_CAF1 75693 90 + 1
ACAGUCGAAAGACACAUAUCAAUCUAUCAUAAUGCGUGGGGCAGCGAGCCUCUCAUUGUUCCGCCGCCAUUGGGAGGACACUCCUCAUCG
...(((....)))................(((((((((((((((.(((...))).)))))))).)).))))).((((.....)))).... ( -28.10)
>DroYak_CAF1 78061 90 + 1
ACAUUCGAAAGACACAUAUCAAUCUAGCAUAAUGCGUGGAGCAGCGAGUCUCCCAUUGUUCCACCGCCAUUAGGAGGACACUCCUCAUCC
....((....)).................(((((((((((((((.(.......).)))))))).)).)))))((((....))))...... ( -22.70)
>consensus
ACAAUCGAAAGACACAUAUCAAACUAACAUAAUGCGUGGAGCAGCGAGUCUCUCAUUGUUCCACCGCCAUUGGGAGGACACUCCUCAUCC
....((....)).................(((((((((((((((.(((...))).)))))))).)).))))).((((.....)))).... (-21.82 = -22.14 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:12 2006