Locus 5592

Sequence ID 3L_DroMel_CAF1
Location 15,339,255 – 15,339,348
Length 93
Max. P 0.996253
window8842

overview

Window 2

Location 15,339,255 – 15,339,348
Length 93
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 93.23
Mean single sequence MFE -30.40
Consensus MFE -27.53
Energy contribution -27.45
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -2.32
Structure conservation index 0.91
SVM decision value 2.67
SVM RNA-class probability 0.996253
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15339255 93 - 23771897
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGCCUUCCGGUUUGCUGGAUUUU-UUUGGUGAAGUGCCAGUUACCCACUGGGUUGGUU
(..((((.(((((((((((((....))))))...(((((..(((((....))))).(((-......)))))))))))))))....))))..).. ( -31.80)
>DroSec_CAF1 71284 94 - 1
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGCCUGCCGGUUUGCUGGAUUUUUUUUGGUGAAGUGCCAGUUACCCACUGGGUUGGUU
(..((((.(((((((((((((....))))))...(((((.......((..(..((.....))..)..))))))))))))))....))))..).. ( -31.21)
>DroSim_CAF1 72705 94 - 1
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGCCUGCCGGUUUGCUGGAUUUUUUUUGGUGAAGUGCCAGUUACCCACUGGGUUGGUU
(..((((.(((((((((((((....))))))...(((((.......((..(..((.....))..)..))))))))))))))....))))..).. ( -31.21)
>DroEre_CAF1 71507 93 - 1
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGCUUGCCGGCUUGCUGGAUUUU-UUUGGUGAAGUGCCAGUUACCCACAGGGUUGGUU
(..((((((((((((((((((....))))))...(((((((.((((....))))(((..-...))).))))))))))))))...)))))..).. ( -33.00)
>DroYak_CAF1 73657 90 - 1
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGCCUGCCAGUUUGCUGGUUUUU-UUU---GAAGUGCCAGUUACCCACUGUGUUGGUU
(..(((..(((((((((((((....))))))...(((((..(((((....)))))....-...---...))))))))))))....).))..).. ( -27.20)
>DroAna_CAF1 68913 91 - 1
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGUUUGCUGGG-UGCUGGAUUUU--UUGGUGAAGUGCCAGUAACCAACUGGGUUGGUU
(..((((((((.(((((.(..((..((((.....))))))..)))))-)((((((((((--.....))))).))))).))))...))))..).. ( -28.00)
>consensus
UUGGCCUUGGUAACUUAAGUGGAUUCGCUUGUUAGGCGCCUGCCGGUUUGCUGGAUUUU_UUUGGUGAAGUGCCAGUUACCCACUGGGUUGGUU
(..((((.(((((((((((((....))))))...(((((...((((....)))).(((........)))))))))))))))....))))..).. (-27.53 = -27.45 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:11 2006