| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,330,214 – 15,330,319 |
| Length | 105 |
| Max. P | 0.576141 |
| Location | 15,330,214 – 15,330,319 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.05 |
| Mean single sequence MFE | -22.01 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15330214 105 + 23771897 CAAAAACGAAG---GCAAG--AAAAAAAAUGCUAGCA-A-AAUGACUGCAAUCUGUCGUCUCAACGUUGAUGACAUUUUGAGUGAAUGAACCA---ACG-----AACGAGCCUACUUCUC .........((---((...--........((....))-.-..(.(((.(((..(((((((........)))))))..)))))).)........---...-----.....))))....... ( -19.90) >DroPse_CAF1 65005 104 + 1 CAAAAAAGAAGAAUGCCAG--AAA--AAAUGGAAGCG-A-AAUGACUGCAAUCUGUCGUCUCAAAGCUGAUGACAUUUUGAGUGAAUGAACGA---ACA----GGCCGAGCCUACGC--- ...............(((.--...--...)))..(((-.-..(.(((.(((..(((((((........)))))))..)))))).)........---..(----(((...)))).)))--- ( -22.30) >DroGri_CAF1 65978 108 + 1 --AAAUGGAAA---GCCAAAAAAA-AAAAUGCUAGCAGA-AAUGACUGCAAUCUGUCGUCUCAACGUUGAUGACAUUUUGAGUGAAUGAACGGCGCACAAAUGUGGCCAGCCUAU----- --....((...---(((((((...-....(((.((((..-..)).)))))...(((((((........)))))))))))).))........(((.(((....))))))..))...----- ( -27.40) >DroWil_CAF1 66115 89 + 1 CAAAA----------C-AA--AAA-AAAGUGCUAGCA-AAAAUGACUGCAAUCUGUCGUCUCAACGUUGAUGACAUUUUGAGUGAAUGAA----------------CGAGCCUAUCUUAC .....----------.-..--...-..((.(((....-....(.(((.(((..(((((((........)))))))..)))))).).....----------------..)))))....... ( -17.06) >DroAna_CAF1 59810 99 + 1 CAAAAACGAAG---CC-AG--AAA-AAAAUGCUGGCA-A-AAUGACUGCAAUCUGUCGUCUCAACGUUGAUGACAUUUUGAGUGAAUGAACCA---ACG-----AGCGGGCCUACC---- ..........(---((-((--...-......))))).-.-.....((((....(((((((........)))))))..(((.((......))))---)..-----.)))).......---- ( -23.10) >DroPer_CAF1 64413 104 + 1 CAAAAAAGAAGAAUGCCAG--AAA--AAAUGGAAGCG-A-AAUGACUGCAAUCUGUCGUCUCAAAGCUGAUGACAUUUUGAGUGAAUGAACGA---ACA----GGCCGAGCCUACGC--- ...............(((.--...--...)))..(((-.-..(.(((.(((..(((((((........)))))))..)))))).)........---..(----(((...)))).)))--- ( -22.30) >consensus CAAAAAAGAAG___GCCAG__AAA_AAAAUGCUAGCA_A_AAUGACUGCAAUCUGUCGUCUCAACGUUGAUGACAUUUUGAGUGAAUGAACGA___ACA_____GCCGAGCCUACC____ ..........................................(.(((.(((..(((((((........)))))))..)))))).)................................... (-13.80 = -13.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:07 2006