Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,606,799 – 1,606,917 |
Length | 118 |
Max. P | 0.929670 |
Location | 1,606,799 – 1,606,917 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -25.02 |
Energy contribution | -25.80 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.02 |
Mean z-score | -2.60 |
Structure conservation index | 0.91 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.929670 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1606799 118 + 23771897 AAUUGAUUUGAGCGUAUCGUUAUGUAAAUGCAAAAUAAUGUGAUAUUAUUAAAUGCAUUUCAUUGAUAUAUAGACAAAACCAAGAGGAUUUGUGUAUAUCCUUCAAAUCGGACCUUCA ..((((((((((.((((((..(((.(((((((...(((((......)))))..))))))))))))))))(((.(((((.((....)).))))).)))....))))))))))....... ( -28.70) >DroSec_CAF1 2852 116 + 1 GAUUGAUUUGAGCGUAUCGUUAUGUAAAUGCAAAAUAAUGUGAUAUUAUUAAAUGCAUUUCAUUGAUA--UAGACAAAACCAAGAGGAUUUGUGUAGAUACUUCGAAUCGGACCUUCA ..((((((((((.(((((((((((.(((((((...(((((......)))))..))))))))).)))).--((.(((((.((....)).))))).)))))))))))))))))....... ( -30.70) >DroSim_CAF1 2862 116 + 1 GAUUGAUUUCAGCGUAUCGUUAUGUAAAUGCAAAAUAAUGUGAUAUUAUUAAAUGCAUUUCAUUGAUA--UAGACAAAACCAAGAGGAUUUGUAUAGAUACUUCGAAUCGGACCUUCA ..(((((((.((.(((((((((((.(((((((...(((((......)))))..))))))))).)))).--...(((((.((....)).)))))...))))))).)))))))....... ( -23.50) >consensus GAUUGAUUUGAGCGUAUCGUUAUGUAAAUGCAAAAUAAUGUGAUAUUAUUAAAUGCAUUUCAUUGAUA__UAGACAAAACCAAGAGGAUUUGUGUAGAUACUUCGAAUCGGACCUUCA ..((((((((((.(((((((((((.(((((((...(((((......)))))..))))))))).))))...((.(((((.((....)).))))).)))))))))))))))))....... (-25.02 = -25.80 + 0.78)
Location | 1,606,799 – 1,606,917 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -20.33 |
Energy contribution | -21.33 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.22 |
Structure conservation index | 0.80 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1606799 118 - 23771897 UGAAGGUCCGAUUUGAAGGAUAUACACAAAUCCUCUUGGUUUUGUCUAUAUAUCAAUGAAAUGCAUUUAAUAAUAUCACAUUAUUUUGCAUUUACAUAACGAUACGCUCAAAUCAAUU .........(((((((.(((((((.(((((.((....)).)))))...)))))).((((((((((...((((((.....)))))).))))))).))).......)..))))))).... ( -27.30) >DroSec_CAF1 2852 116 - 1 UGAAGGUCCGAUUCGAAGUAUCUACACAAAUCCUCUUGGUUUUGUCUA--UAUCAAUGAAAUGCAUUUAAUAAUAUCACAUUAUUUUGCAUUUACAUAACGAUACGCUCAAAUCAAUC .........((((.((.(((((...(((((.((....)).)))))...--.....((((((((((...((((((.....)))))).))))))).)))...)))))..)).)))).... ( -25.00) >DroSim_CAF1 2862 116 - 1 UGAAGGUCCGAUUCGAAGUAUCUAUACAAAUCCUCUUGGUUUUGUCUA--UAUCAAUGAAAUGCAUUUAAUAAUAUCACAUUAUUUUGCAUUUACAUAACGAUACGCUGAAAUCAAUC .........((((((..(((((...(((((.((....)).)))))...--.....((((((((((...((((((.....)))))).))))))).)))...)))))..)).)))).... ( -24.10) >consensus UGAAGGUCCGAUUCGAAGUAUCUACACAAAUCCUCUUGGUUUUGUCUA__UAUCAAUGAAAUGCAUUUAAUAAUAUCACAUUAUUUUGCAUUUACAUAACGAUACGCUCAAAUCAAUC .........((((.((.(((((...(((((.((....)).)))))..........((((((((((...((((((.....)))))).))))))).)))...)))))..)).)))).... (-20.33 = -21.33 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:20 2006