| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,329,697 – 15,329,795 |
| Length | 98 |
| Max. P | 0.655440 |
| Location | 15,329,697 – 15,329,795 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 92.45 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -26.51 |
| Energy contribution | -26.35 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15329697 98 + 23771897 AAUGAUGGGGGCGGCCAUCAUAGUGGUAAGCAAUAAAGUAUGGGGUGAGUGGCUCUGAUGGAGCUGCUAUAAUGUCAACGGCAUGGCCAUCGGGAUUG .(((((((......))))))).(((((..((......((.(((.((.((..((((.....))))..))...)).))))).))...)))))........ ( -30.20) >DroSec_CAF1 61750 98 + 1 AAUGAUGGGUGCGGCCAUCCUAGUGGUAAGCAAUAAAGUAUGGGGUGAGUGGCUCUGAUGGAGCUGCUAUAAUGUCAACGGCAUGGCCAUCGGGAUUG ..((((((((((.(((((....)))))..........((.(((.((.((..((((.....))))..))...)).))))).))))..))))))...... ( -31.40) >DroSim_CAF1 62365 98 + 1 AAUGAUGGAGGCGGCCAUCCUAGUGGUAAGCAAUAAAGUAUGGGGUGAGUGGCUCUGAUGGAGCUGCUAUAAUGUCAACGGCAUGGCCAUCGGGAUUG .....(((......)))(((..(((((..((......((.(((.((.((..((((.....))))..))...)).))))).))...)))))..)))... ( -30.60) >DroEre_CAF1 62247 98 + 1 AAUGAUGGGGGCGGCCAUCCUAGUGGUAAGCAAUGAAGUAGGGAGUGAGUGGCUCUGAUGGAGCUGCUAUAAUGUCAACGGCAUGGCCAUCGGGAUUG .....(((......)))(((..(((((.....(((..((.((.(...((..((((.....))))..))....).)).))..))).)))))..)))... ( -30.50) >DroYak_CAF1 63871 98 + 1 AAUGAUGGGGGCGGCCAUCCUAGUGCCAAGCAACAAAGUAUGGAGUGAGUGGCUCUGAUGGAGCUGCUAUAAUGUCAACGGCAUGGCCAUCGGGAUUG ..((((((.((((((..((((((.((((..((.((.....))...))..)))).)))..)))))))))...((((.....))))..))))))...... ( -32.60) >DroAna_CAF1 59323 98 + 1 AAUGAUAGAGGCGGCCAUCCUAGUGGUAAGCAAUAAAGCAUGGGGUGAGUGGCUUUGAUGGAGCUGCUAUAAUGCUACUGGCAUGGCCAACAGGCUGC ............((((((.(((((((((.((......))........((..((((.....))))..))....))))))))).)))))).......... ( -34.40) >consensus AAUGAUGGGGGCGGCCAUCCUAGUGGUAAGCAAUAAAGUAUGGGGUGAGUGGCUCUGAUGGAGCUGCUAUAAUGUCAACGGCAUGGCCAUCGGGAUUG ..((((((..((.(((((....)))))..))......((.(((.((.((..((((.....))))..))...)).)))...))....))))))...... (-26.51 = -26.35 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:06 2006