| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,320,215 – 15,320,305 |
| Length | 90 |
| Max. P | 0.783549 |
| Location | 15,320,215 – 15,320,305 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.77 |
| Mean single sequence MFE | -34.72 |
| Consensus MFE | -29.42 |
| Energy contribution | -29.07 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783549 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15320215 90 + 23771897 UUGCCGGAGUUCC------CUUGCCGCUCAGCGGGCGAUCUACUCGCUCUUGGGCGGGCUAAAAAUGUUGGUAG-GCAUUUGUAGUAGGUAAAAUCA-------- (((((((....))------....((((((((.((((((.....))))))))))))))((((.(((((((....)-)))))).)))).))))).....-------- ( -35.50) >DroSec_CAF1 52222 90 + 1 UUGCCGGAGUUCC------CUUGCCGCUCAGCGGGCGAUCUACUCGCUCUUGGGCGGGCCAAAAAUGUUGGUAG-GCAUUUGUAGUAGGUAAAAUCA-------- (((((((....))------..((((((((((.((((((.....))))))))))))..(((((.....))))).)-))).........))))).....-------- ( -33.20) >DroSim_CAF1 52819 90 + 1 UUGCCGGAGUUCC------CUUGCCGCUCAGCGGGCGAUCUACUCGCUCUUGGGCGGGCCAAAAAUGUUGGUAG-GCAUUUGUAGUAGGUAAAAUCA-------- (((((((....))------..((((((((((.((((((.....))))))))))))..(((((.....))))).)-))).........))))).....-------- ( -33.20) >DroEre_CAF1 52520 89 + 1 UUGCCGCAGUUCC------CUUGCCGCUCAGCGGGCGAUCUACUCGCUCUUGGGCGGGCCAAAA-UGUUGGUAG-GCAUUUGUAGUAGGUAAAAUCA-------- (((((((((...(------((..((((((((.((((((.....))))))))))))))(((((..-..)))))))-)...))))....))))).....-------- ( -33.50) >DroYak_CAF1 50146 90 + 1 UUGCCGCAGUUCC------CUUGCCGCUCAGCGGGCGAUCUACUCGCUCUUGGGCGGGCCAAAACUGUUGGUAG-GCAUUUGUUGUAGGUAAAAUCA-------- (((((((((...(------((..((((((((.((((((.....))))))))))))))(((((.....)))))))-)...))))....))))).....-------- ( -33.50) >DroAna_CAF1 49925 104 + 1 UUGCCUCCGCUCCGCUCCCAUCGUCGCUCAGCGGGUGAUCCACUCGCUCCUGGGCGGUCCAAAGA-GUAGGUAGUGCCAACAUGGUAGGUAGCAUGGGCUGAGUG ..((((..(((((((((......((((((((.((((((.....))))))))))))))......))-))......((((.....)))))).)))..))))...... ( -39.40) >consensus UUGCCGCAGUUCC______CUUGCCGCUCAGCGGGCGAUCUACUCGCUCUUGGGCGGGCCAAAAAUGUUGGUAG_GCAUUUGUAGUAGGUAAAAUCA________ (((((..................((((((((.((((((.....))))))))))))))(((((.....)))))...............)))))............. (-29.42 = -29.07 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:02 2006