Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,319,523 – 15,319,618 |
Length | 95 |
Max. P | 0.769170 |
Location | 15,319,523 – 15,319,618 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.37 |
Mean single sequence MFE | -29.86 |
Consensus MFE | -19.78 |
Energy contribution | -22.10 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.06 |
Mean z-score | -2.04 |
Structure conservation index | 0.66 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.769170 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15319523 95 - 23771897 AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU ..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50) >DroSec_CAF1 51540 95 - 1 AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU ..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50) >DroSim_CAF1 52147 95 - 1 AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU ..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50) >DroYak_CAF1 49253 95 - 1 AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUUUUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC------GACUCCCUUCCAUUUGUCU ..(((((((..((((........(((((((((....))))....))))).(((.((((((....)))))).)))..------)))).......))))))). ( -30.50) >DroAna_CAF1 49105 83 - 1 AUGACAAGUCAAGUCAUUAUCAUUCCGCCAGCU-----A-------GAGUGGGUGGCCCAGG------ACUUCUCGGCCGUGGCCGCCUCUUCAUUUGUCU ..(((((((.(((.......(((((........-----.-------)))))(((((((..((------.((....))))..))))))).))).))))))). ( -27.30) >consensus AUGACAAGUCAAGUCAUUAUCAUCCCGCCUGGUCCUCCAGAUGUGUGGGUGGAUGUCCUAGGGUUAGGACCUCCCC______GACUCCCUUCCAUUUGUCU ..(((((((..((((.....((((((((((((....))))..))).)))))((.((((((....)))))).)).........)))).......))))))). (-19.78 = -22.10 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:01 2006