Locus 5584

Sequence ID 3L_DroMel_CAF1
Location 15,319,099 – 15,319,189
Length 90
Max. P 0.689707
window8831

overview

Window 1

Location 15,319,099 – 15,319,189
Length 90
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 68.87
Mean single sequence MFE -19.33
Consensus MFE -10.95
Energy contribution -11.73
Covariance contribution 0.78
Combinations/Pair 1.06
Mean z-score -1.48
Structure conservation index 0.57
SVM decision value 0.33
SVM RNA-class probability 0.689707
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15319099 90 - 23771897
-----------------------UUCAAAAUUGAAUAAAA-AGAUUUCUAUAUUUUUAGUAGGCCGUACUUACAUUGCGUCAAAUGUGACAUUACUGCUAUUAUUUUGACCGCA
-----------------------.(((((((.......((-((((......))))))....(((.(((.(((((((......)))))))...))).)))...)))))))..... ( -14.00)
>DroSim_CAF1 51723 90 - 1
-----------------------UUUUUGAUUUGAUAUAA-AGAUUCCUAUAUUUUUAGUAGGCAGUAUUUACAUUCCGUCCAAUGUGACAUUACUGCUAUUAUUUUGACCGCA
-----------------------...(..(..((((.(((-((((......)))))))...(((((((.(((((((......)))))))...)))))))))))..)..)..... ( -17.40)
>DroYak_CAF1 48821 113 - 1
UGACAGAACUUAGUGUAAAACACUAUGGAAACAAAUAAAAUAUAUUGCUAG-GUUCUAGUAGGCAGUAUUAACAUUCCGUCGAAUGUGUCAUUAUUGCUAUUAUUUUGACCGCA
..((((((((((((...........((....))((((.....)))))))))-))))).)).(((((((...((((((....)))))).....)))))))............... ( -26.60)
>consensus
_______________________UUUAAAAUUAAAUAAAA_AGAUUCCUAUAUUUUUAGUAGGCAGUAUUUACAUUCCGUCAAAUGUGACAUUACUGCUAUUAUUUUGACCGCA
........................................................((((((.(((((.(((((((......)))))))...)))))))))))........... (-10.95 = -11.73 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:00 2006