Locus 5583

Sequence ID 3L_DroMel_CAF1
Location 15,316,727 – 15,316,826
Length 99
Max. P 0.548468
window8830

overview

Window 0

Location 15,316,727 – 15,316,826
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 87.42
Mean single sequence MFE -15.08
Consensus MFE -10.07
Energy contribution -10.35
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.67
SVM decision value 0.03
SVM RNA-class probability 0.548468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15316727 99 - 23771897
UCAGUUUUGAACUGAUAAAACAUA-AAUAAGAAUCCUAAAUUUCCUUCUCCUAAUAUUCCGAGAUACCCCAGCCUAAAUGGGAUUAGUUUAAAUUAAAGA
.....(((((((((((........-.....................((((..........))))...((((.......)))))))))))))))....... ( -15.90)
>DroSec_CAF1 48720 99 - 1
UCAUUUUUAAACUGAUAAAACUUA-AAUAGGAAUCCUAAAUUUCCUUCCCCUAAUAUUCCGAGAUACCCCAGCCUAAAAGGGAUUAGUUUAAAUUAAAGA
.....(((((((((((........-...(((((........))))).....................(((.........))))))))))))))....... ( -16.00)
>DroSim_CAF1 49321 99 - 1
UCAUUUUUAAACUGAUAAAACUUA-AAUAGGAAUCCUAAAUUUCCUUCCCCUAAUAUUCCGAAAUACCCCAGCCUAAAUGGGAUUAGUUUAAAUUAAAGA
.....(((((((((((........-...(((((........))))).....................((((.......)))))))))))))))....... ( -18.20)
>DroEre_CAF1 48630 100 - 1
CUCAUUUUAAACUGAUAAAACUAAAAAUAAAAACCCAAAAUGUCCUUCCAUUAAUAUUUUGAAAUAUCCCAGCCUAAAGGGGAUUAGUUUAAAUUAAAGA
.....(((((((((((...................((((((((..........)))))))).....((((........)))))))))))))))....... ( -16.90)
>DroYak_CAF1 46391 99 - 1
UACAUUUUAAACCGAUAAAACUUA-AAUAAAAAUCAUACAGUUCCUUCUCUUAAUAUUCCGAAAUAUCCCAGCCUAAAGGGGAUUAGUUUAAAUUAAAGA
.....(((((((..((........-....................(((............)))...((((........))))))..)))))))....... (  -8.40)
>consensus
UCAAUUUUAAACUGAUAAAACUUA_AAUAAGAAUCCUAAAUUUCCUUCCCCUAAUAUUCCGAAAUACCCCAGCCUAAAGGGGAUUAGUUUAAAUUAAAGA
.....(((((((((((.......................(((((................)))))..(((.........))))))))))))))....... (-10.07 = -10.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:59 2006