Locus 5582

Sequence ID 3L_DroMel_CAF1
Location 15,316,001 – 15,316,108
Length 107
Max. P 0.793886
window8829

overview

Window 9

Location 15,316,001 – 15,316,108
Length 107
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 74.08
Mean single sequence MFE -28.47
Consensus MFE -14.09
Energy contribution -13.95
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.49
SVM decision value 0.60
SVM RNA-class probability 0.793886
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15316001 107 + 23771897
GCUCUGAUUACGUACUAUGCGAUUAUGAUUUUGUAGAAAGGAUUAGGUGCAUAUUACGGUGGAGUA------GUCGGGAGCAAACGAACCGCGAAACCUCGAGACAGA--GUUGG
((((((....((((.((((((....(((((((......)))))))..)))))).))))...(((..------.(((((..(....)..)).)))...)))....))))--))... ( -30.70)
>DroPse_CAF1 50644 92 + 1
GCUCUGAUUACGUACUAUGCGAUUAUGAUUUUGUGAAAAGGAUUAGUUGCAUACUACGCUGAAGUA------GA-----GG------------AAACCUCCAGCUAAGGGAUCAG
...(((((..((((.((((((((((...((((....))))...)))))))))).)))((((.....------((-----((------------...))))))))...)..))))) ( -27.50)
>DroSec_CAF1 47990 107 + 1
GCUCUGAUUACGUACUAUGCGAUUAUGAUUUUGUAAAAAGGAUUAGGUGCAUAUUACGGUGGAGUA------GUCGGGAGCAAACGAACCGCGAAACCUCGAGACAGA--GUUGG
((((((....((((.((((((....(((((((......)))))))..)))))).))))...(((..------.(((((..(....)..)).)))...)))....))))--))... ( -30.70)
>DroWil_CAF1 49563 98 + 1
ACUGUGAUUACGUAGUAUGCGAUUAUAAUUUUGUAAAAAGGAUUAGGUGCAUAUUACGC---------------AAGGAGCAAACGAACCGCGAAACCUUGAGUAGAA--GUAAA
(((...(((.(((((((((((....(((((((......)))))))..)))))))))))(---------------((((.((.........))....))))))))...)--))... ( -24.90)
>DroAna_CAF1 46151 113 + 1
GCUCUGAUUACGUACUAUGCGAUUAUGAUUUUGUAGAAAGGAUUAGGUGCAUAUUACGUUGGAGUAGCAGUAGCUGGGGCCAAACGAACCGCGAAACCUCGAGCCCAA--CUCGG
(((((....(((((.((((((....(((((((......)))))))..)))))).))))).)))))(((....))).((((....(((...........))).))))..--..... ( -29.50)
>DroPer_CAF1 49435 92 + 1
GCUCUGAUUACGUACUAUGCGAUUAUGAUUUUGUGAAAAGGAUUAGUUGCAUACUACGCUGAAGUA------GA-----GG------------AAACCUCCAGCUAAGGGAUCAG
...(((((..((((.((((((((((...((((....))))...)))))))))).)))((((.....------((-----((------------...))))))))...)..))))) ( -27.50)
>consensus
GCUCUGAUUACGUACUAUGCGAUUAUGAUUUUGUAAAAAGGAUUAGGUGCAUAUUACGCUGGAGUA______GA_GGGAGCAAACGAACCGCGAAACCUCGAGCCAAA__GUCAG
..........((((.((((((....(((((((......)))))))..)))))).))))......................................................... (-14.09 = -13.95 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:57 2006