| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,599,860 – 1,599,951 |
| Length | 91 |
| Max. P | 0.754954 |
| Location | 1,599,860 – 1,599,951 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 92.13 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -22.81 |
| Energy contribution | -22.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.754954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1599860 91 - 23771897 CAAUAGCAUUGUCGGUGGGCGACGCGAGCUGAUUUUUAUUCGGUCUCUUUGCCUGUCGUUCUUUUUUUUUUUGUGGCCCGCAAAAAACCAA ............(((..(((((...(((((((.......)))).))).)))))..)))........(((((((((...))))))))).... ( -23.90) >DroSim_CAF1 1636 85 - 1 CAAUAGCAUUGUCGGUGGGCGAUGCGAGCUGAUUUUUAUUCGGUCUCUUCGCCUAUCGUUCUU------UUUGUGGCCCGCAAAAAACCAA ............((((((((((...(((((((.......)))).))).))))))))))...((------((((((...))))))))..... ( -27.40) >DroYak_CAF1 1686 85 - 1 CAAUAGCAUUGUCGGUGGGCGAGGCGAGCUGAUUUUUAUUCGGUCUCUUUGCCUAUCGUUCUU------UUUGUGGCCCGCAAAAAAGCAA .....((.....((((((((((((.((.((((.......)))))).))))))))))))...((------((((((...)))))))).)).. ( -30.00) >consensus CAAUAGCAUUGUCGGUGGGCGACGCGAGCUGAUUUUUAUUCGGUCUCUUUGCCUAUCGUUCUU______UUUGUGGCCCGCAAAAAACCAA ............((((((((((...(((((((.......)))).))).))))))))))...........((((((...))))))....... (-22.81 = -22.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:18 2006