Locus 5576

Sequence ID 3L_DroMel_CAF1
Location 15,298,044 – 15,298,135
Length 91
Max. P 0.512725
window8819

overview

Window 9

Location 15,298,044 – 15,298,135
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 92.23
Mean single sequence MFE -21.49
Consensus MFE -19.12
Energy contribution -19.32
Covariance contribution 0.20
Combinations/Pair 1.21
Mean z-score -1.18
Structure conservation index 0.89
SVM decision value -0.04
SVM RNA-class probability 0.512725
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15298044 91 + 23771897
CGAAACCGCAGCCUCCUUCUGCGCUCGGCAUGUGGAAAGAUAUUUCCCAAUAAAAAUUGGGUUAGUUGCGGAAUUUCCGUAUAUUAAAUAU
.(((((((((((.(((...(((.....)))...))).........((((((....))))))...)))))))..)))).............. ( -24.60)
>DroSec_CAF1 29833 91 + 1
CGAAACCGCAGCCUCCUUCUGCGCUCGGCAUGUGGAAAGAUAUUUCCCAAUAAAAAUUGGGUUAGUUGCGGAAUUUCCGUAUAUUAAAUAU
.(((((((((((.(((...(((.....)))...))).........((((((....))))))...)))))))..)))).............. ( -24.60)
>DroSim_CAF1 30220 91 + 1
CGAAACCGCAGCCUCCUUCUGAGCUCGGCAUGUGGAAAGAUAUUUCCCAAUAAAAAUUGGGUUAGUUGCGGAAUUUCCGUAUAUUAAAUAU
.....((((((((..((....))...))).)))))..........((((((....))))))((((((((((.....))))).))))).... ( -24.40)
>DroEre_CAF1 29807 91 + 1
CGAAACCACAGUCUCCUUCUGCGCUCGGCAUGUGGAAAGAUAUUUUCCAAUAAAAAUUGGGUUAGUUGAGGAAUUUCCGUAUAUUAAAUAU
.....((((((((.............))).)))))..........((((((....))))))(((((...((.....))....))))).... ( -15.22)
>DroYak_CAF1 27268 91 + 1
CGAAACCGCAGCCUCCUUCUGCGCUCGGCAUGUGGAAAGAUAUUUUCCAAUAAAAAUUGGGUUAGUUGCGGAAUUUCCGUAUAUUAAAGAU
.(((((((((((.(((...(((.....)))...))).........((((((....))))))...)))))))..)))).............. ( -22.40)
>DroAna_CAF1 28096 91 + 1
GGAAACCGCAGCCUCCUUCAGGGUCUGGUAUGUGCAAAGAUAUUUUCCAAUAAAAAUUGGUUUCGAUGAGGAAUUUCCUUCUAUAAAAUAU
.((((((((((((.((.....))...)))...)))...((.....))...........))))))...((((.....))))........... ( -17.70)
>consensus
CGAAACCGCAGCCUCCUUCUGCGCUCGGCAUGUGGAAAGAUAUUUCCCAAUAAAAAUUGGGUUAGUUGCGGAAUUUCCGUAUAUUAAAUAU
.....((((((((.............))).)))))..........((((((....))))))((((((((((.....))))).))))).... (-19.12 = -19.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:48 2006