Locus 5573

Sequence ID 3L_DroMel_CAF1
Location 15,280,677 – 15,280,768
Length 91
Max. P 0.912998
window8814

overview

Window 4

Location 15,280,677 – 15,280,768
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 80.03
Mean single sequence MFE -21.37
Consensus MFE -12.76
Energy contribution -12.95
Covariance contribution 0.19
Combinations/Pair 1.05
Mean z-score -2.49
Structure conservation index 0.60
SVM decision value 1.09
SVM RNA-class probability 0.912998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15280677 91 - 23771897
GAGCGUGAGUGU--GUCACAAAAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGCUUGAAG-UAACCGU-------CC----CACUCU-UUCACUC
(((.(.(((((.--(.((((((((((....).))))))))...((((((...((.........))...)))-)))..).-------).----))))).-..).))) ( -22.70)
>DroVir_CAF1 11901 91 - 1
UGCUGUGAGUGUCAGUCACA-AAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGUC-GAGCAUU-CUCU-------CU----CUCGCU-CUUUCGU
(((.(((((((.....((.(-(((((....).))))))).....))))))).)))...........-((((...-....-------..----...)))-)...... ( -17.50)
>DroEre_CAF1 12634 91 - 1
GAGCGUGAGUGU--GUCACAAAAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGCUUGAAG-UAAUCGU-------CC----CACUCU-UUCACUC
(((.(.(((((.--(.((((((((((....).))))))))...((((((...((.........))...)))-)))..).-------).----))))).-..).))) ( -22.80)
>DroYak_CAF1 9330 91 - 1
GAGCGUGAGUGU--GUCACAAAAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGCUUGAAG-UAACCGU-------CC----CACUCU-UUCACUC
(((.(.(((((.--(.((((((((((....).))))))))...((((((...((.........))...)))-)))..).-------).----))))).-..).))) ( -22.70)
>DroMoj_CAF1 11166 102 - 1
UGCUGUGAGUGUCAGUCACA-AAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGUC-GAGCAUA-CUCCAGCUCAGCCCUGGCUCUCU-CACUUGC
.((.(((((.(((((.....-(((((((((((....))))))..........)))))......((.-((((...-.....)))).)).)))))...))-)))..)) ( -24.10)
>DroAna_CAF1 12435 93 - 1
CACCAUGAGUGU--GUCACAAAAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGCUUGAAGAUGCCCCU-------CC----CACACUAUUCAUUC
.......(((((--(..(((((((((....).))))))))............(((((((.......)))..))))....-------..----))))))........ ( -18.40)
>consensus
GACCGUGAGUGU__GUCACAAAAUGCUAACGACAUUUUGUUAUUUACUUAUUGCAUUCAUUUAGCUUGAAG_UAACCCU_______CC____CACUCU_UUCACUC
....((((((((..((.(((((((((....).)))))))).)).........)))))))).............................................. (-12.76 = -12.95 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:43 2006