Locus 5572

Sequence ID 3L_DroMel_CAF1
Location 15,272,922 – 15,273,024
Length 102
Max. P 0.508277
window8813

overview

Window 3

Location 15,272,922 – 15,273,024
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 83.58
Mean single sequence MFE -30.80
Consensus MFE -21.61
Energy contribution -21.45
Covariance contribution -0.16
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.508277
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15272922 102 - 23771897
CCUUCAAAUCCAAAGGGGAAAAACCCACCAGAUCCGAUAGUAGAAUUCGCACUCACAGUACUCGGAUCCACCGUCCAGUUGGAAUAGUCAGCUGGGGAGAUA
........(((...(((......)))....(((((((..(((((........))....))))))))))......((((((((.....))))))))))).... ( -27.20)
>DroPse_CAF1 7133 101 - 1
CCCUCGAAACCAAAGGGGAAAAAACCCCCAGAUCCAAUUGUGGCAUUGGCACUCACAGUCGAUGGGUCCACAGUCCAGUUGGUGAAGUCAGCUGGGUAAUU-
..............((((.......)))).......((((((((((((((.......)))))))...)))))))((((((((.....))))))))......- ( -31.70)
>DroSec_CAF1 4573 102 - 1
CCUUCAAAUCCAAAGGGGAAAAAACCACCGGAUCCGAUAGUAGAAUUCGCACUCACAGUGCUCGGAUCCACCGUCCAGUUGGAAUAGUCAGCUGGGGAGAUA
........(((...((((......)).))((((((((.....(....)((((.....)))))))))))).....((((((((.....))))))))))).... ( -35.60)
>DroEre_CAF1 4834 99 - 1
CCUUCAAAUCCAAAGGGGAAAAAGCCCCCUGCUCCGAUGGUAGAAUUCGCACUCACAGUACUCGGAUCCACCGUCCAGUUGGAAAAGUCGGCUGGAGA---A
.............(((((.......))))).((((((((((.((.((((.((.....))...)))))).)))))).((((((.....)))))))))).---. ( -28.00)
>DroYak_CAF1 1226 102 - 1
CCUUCAAAUCCAAAGGGGAAAAAGCCCCCUUCUCCGAUGGUAGAAUUCGCACUCACAGUACUCGGAUCCACCGUCCAGUUGGAAUAGUCGGCUGGAGAGAUA
.......(((...(((((.......)))))(((((((((((.((.((((.((.....))...)))))).)))))).((((((.....)))))))))))))). ( -29.40)
>DroPer_CAF1 7149 101 - 1
CCCUCGAAACCGAAGGGGAAAAAACCCCCAGAUCCAAUUGUGGCAUUGGCACUCACAGUCGAUGGGUCCACAGUCCAGUUGGUGAAGUCAGCUGGGUAAUU-
((((((....)).)))).........(((((..(((((((.(((..(((.((((((....).))))))))..))))))))))((....)).))))).....- ( -32.90)
>consensus
CCUUCAAAUCCAAAGGGGAAAAAACCCCCAGAUCCGAUAGUAGAAUUCGCACUCACAGUACUCGGAUCCACCGUCCAGUUGGAAAAGUCAGCUGGGGAGAUA
..............((((.......)))).(((((((..((((........)).)).....))))))).....(((((((((.....)))))))))...... (-21.61 = -21.45 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:42 2006