| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,260,045 – 15,260,153 |
| Length | 108 |
| Max. P | 0.692293 |
| Location | 15,260,045 – 15,260,153 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 64.81 |
| Mean single sequence MFE | -28.70 |
| Consensus MFE | -7.24 |
| Energy contribution | -8.04 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.25 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692293 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15260045 108 + 23771897 GGCAACGGCCUUUGGUCGAUCGAACAACUUUAUCAACCAAAGGCCAAUUAGUCGUGUCCAGUUGAAGACCUAAAGCGAUUGG-CAGCAAAUG---CU--------AAAUGUUUCUAUAUA ((.(((((((((((((.(((.((.....)).))).))))))))))..(((((..((((((((((...........)))))))-..)))...)---))--------))..))).))..... ( -32.70) >DroSim_CAF1 157454 107 + 1 GGUAACGGCCUUUGGUCGAUCGAACAACUUCAUCAACCAAAGGCCAAUUAGUCGUGUCCAGUUGAAGACCUAAAGCGAUU-G-CAGCAAUUG---CU--------AAAUGUUACUAAAUA ((((((((((((((((.(((.(((....)))))).))))))))))..((((((...((.....)).)).))))(((((((-(-...))))))---))--------....))))))..... ( -36.90) >DroEre_CAF1 149447 84 + 1 GGUGACGGCCUUUGGUCGAUCGAACAACUUCAUAACCGAAAGCCCAAUUAGUCGCGUCCA--------GUUGAUGCGAUU-G-CACAAGUUG---UU----------------------- ..((((((((...))))).)))((((((((......(....)......((((((((((..--------...)))))))))-)-...))))))---))----------------------- ( -25.30) >DroYak_CAF1 155646 105 + 1 GGUAACGGCCUUUGGUCGAUCGAACAACUUCCCAACCGA-AGUCCAAUUAGUCGAGUUGA-----AGACUUGAAGCGAUU-G-CACUAGCUG---CUGCCCUACCAAAUA----UAAAUA ((((.((((..(((((((((((....(((((......))-)))........(((((((..-----.)))))))..)))))-)-.)))))..)---)))...)))).....----...... ( -28.00) >DroAna_CAF1 141398 110 + 1 GGUUGCGGCCUUUGCACUAACGAACAAAUUAAUAGUGGCCAGUUCAAUUAGUCUCCUCUAUUUAAAGAUCUCAAUUGAUU-GUCACCAAAAGUAGCC--------AUCUUCU-UUAAACU ((((((((((((((..(....)..))))........))))....((((((((....(((......))).....)))))))-).........))))))--------.......-....... ( -20.60) >consensus GGUAACGGCCUUUGGUCGAUCGAACAACUUCAUAAACGAAAGGCCAAUUAGUCGCGUCCA_UU_AAGACCUAAAGCGAUU_G_CACCAAAUG___CU________AAAUG_U__UAAAUA ((..(((((..((((((........................))))))...)))))..))............................................................. ( -7.24 = -8.04 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:39 2006