Locus 557

Sequence ID 3L_DroMel_CAF1
Location 1,599,629 – 1,599,739
Length 110
Max. P 0.761818
window853

overview

Window 3

Location 1,599,629 – 1,599,739
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.93
Mean single sequence MFE -21.67
Consensus MFE -16.13
Energy contribution -15.80
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.23
Structure conservation index 0.74
SVM decision value 0.50
SVM RNA-class probability 0.761818
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1599629 110 + 23771897
AAGCCAACUGAAAUAACUGGACAUGAUU---CCUAUGUAGAC-------UCAUGGACCACAUGGAUGAAUUAACUACAGGGCAUAUCAAUGUUGAUAGAUCUUGUAAAACAAUAGAAAUC
..((((...........))).).(((((---((((((.....-------.))))).((....))..))))))..(((((((..(((((....)))))..))))))).............. ( -19.70)
>DroSim_CAF1 1407 100 + 1
---------GAUAUAACUAGACAUGGUU---CCCAUGUAGAC-------CCAUGGGUCUUCUC-UUGAAUUAACUACAGGGCAUAUCAAUGUUGAUAGAUCUUGUAAAACAAUAGAAAUC
---------...........((((((..---.)))))).(((-------(....))))((((.-(((.......(((((((..(((((....)))))..)))))))...))).))))... ( -24.30)
>DroYak_CAF1 1441 119 + 1
UAGCCAAGUAAAAUAACUAUGCAUGGUUUCUCCUAUGUAUCCUUUGUUCCUGUAAGUCUUCUA-UUAAAUCAACUACAGGGCAUAUCAAUGUUGAUAGAUCUUGUAAGACAAUAGAAAUC
...........(((((..((((((((......))))))))...)))))..........(((((-((...((...(((((((..(((((....)))))..))))))).)).)))))))... ( -21.00)
>consensus
_AGCCAA_UGAAAUAACUAGACAUGGUU___CCUAUGUAGAC_______CCAUGGGUCUUCUA_UUGAAUUAACUACAGGGCAUAUCAAUGUUGAUAGAUCUUGUAAAACAAUAGAAAUC
................(((.((((((......))))))....................................(((((((..(((((....)))))..)))))))......)))..... (-16.13 = -15.80 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:17 2006