Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,259,732 – 15,259,840 |
Length | 108 |
Max. P | 0.554356 |
Location | 15,259,732 – 15,259,840 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -32.40 |
Consensus MFE | -19.58 |
Energy contribution | -19.50 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.16 |
Mean z-score | -1.99 |
Structure conservation index | 0.60 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15259732 108 + 23771897 GCCAGAACGGCCAGCGAUGAUUGCCAUGGCUUCGGCGGGCGAAU----AUGCGAAUAUGCGAAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG (((.....))).((((((.(((((((((((....))..(((.((----.(((......))).)).))).))))))))).)))...)))..((((((....))).)))..... ( -31.70) >DroSec_CAF1 148870 100 + 1 GCCAGAACGGCCAGCGAUGAUUGCCAUGGAUUCGCCGGGCAUAU----AUGCG--------AAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG (((.....))).((((((.(((((((((.((((((.........----..)))--------))).....))))))))).)))...)))..((((((....))).)))..... ( -29.90) >DroSim_CAF1 157141 108 + 1 GCCAGAACGGGCAGCGAUGAUUGCCAUGGCUUCGCCGGGCAUAU----AUGCGAAUAUGCGAAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG ....(((..((((..(((.(((((((((((...)))..((((((----.(((......))).))))))..)))))))).)))..))))..((((((....))).))).))). ( -35.50) >DroYak_CAF1 155336 106 + 1 GCCAGAACGG----CGAUGAUUGCCAUGGCUUCGUCGGGCGAAAUCGAAUGCGAAUA--UGUAUAUGGCCAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG (((.....))----)(((.(((((((((((((((.((..((....))..)))))...--.......)))))))))))).)))........((((((....))).)))..... ( -38.00) >DroAna_CAF1 141047 96 + 1 GCCAGAACGG----CGAUGAUUGCUAUGGCUCCGCCAAGCGAAU----AU------A--UCUGUAUGUAUGUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG (((.....))----)((((.(((((.((((...)))))))))..----.)------)--))(((.((((..((((((((((....))).)))))))..)))).)))...... ( -26.90) >consensus GCCAGAACGG_CAGCGAUGAUUGCCAUGGCUUCGCCGGGCGAAU____AUGCGAAUA__CGAAUAUGUAUAUGGCAAUGGUCAAUGCUAAUUGCCAAUUAUGGACAAAUUCG ....(((........(((.((((((((((.....))..(((........)))..................)))))))).)))........((((((....))).))).))). (-19.58 = -19.50 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:38 2006