Locus 5568

Sequence ID 3L_DroMel_CAF1
Location 15,259,473 – 15,259,587
Length 114
Max. P 0.883136
window8808

overview

Window 8

Location 15,259,473 – 15,259,587
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 94.71
Mean single sequence MFE -22.96
Consensus MFE -22.56
Energy contribution -22.12
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.22
Structure conservation index 0.98
SVM decision value 0.93
SVM RNA-class probability 0.883136
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15259473 114 - 23771897
AUAAAAAAAACUGCCAGAAUUAUUGAGGCGUUGCAACAAUAAUCAUCGCUUCAAUUUCGCUGUCAAUGAAUUUACAGUGAUGGGUACAAUAAUACAAACGUUGUUUAAUUGGAA
...........((((......(((((((((.((..........)).))))))))).(((((((.((.....)))))))))..))))((((...(((.....)))...))))... ( -23.00)
>DroSec_CAF1 148609 113 - 1
AUAAA-AAAACUGCCAGAAUUAUUGAGGCGUUGCAACAAUAAUCAUCGCUUCAAUUUCGCUGUCAAUGAAUUUACAGUGAUGGGUACAAUAAUAUAAACGUUGUUUAAUUGGAA
.....-.....((((......(((((((((.((..........)).))))))))).(((((((.((.....)))))))))..))))((((....(((((...)))))))))... ( -21.70)
>DroSim_CAF1 156880 113 - 1
AUAAA-AAAACUGCCAGAAUUAUUGAGGCGUUGCAACAAUAAUCAUCGCUUCAAUUUCGCUGUCAAUGAAUUUACAGUGAUGGGUACAAUAAUACAAACGUUGUUUAAUUGGAA
.....-.....((((......(((((((((.((..........)).))))))))).(((((((.((.....)))))))))..))))((((...(((.....)))...))))... ( -23.00)
>DroEre_CAF1 148871 112 - 1
ACAAA--AAACUGCCAGAAUUAUUGAGGCGUUGCAAAAAUAAUCAUCGUUUCAAUCUCGCUGUCAAUGGACUUACAGUGAUGGGUACAAUAAUACAAACGAUGUUUGAUUGGAA
.....--....((((......(((((((((.((..........)).))))))))).(((((((..........)))))))..))))((((...(((.....)))...))))... ( -21.10)
>DroYak_CAF1 155078 113 - 1
ACAAA-AAAACUGCCAGAAUUAUUGAGGCGUUGCAACAAUAAUCAUCGUUUCAAUCUCGCUGUCAGUGGACUUACAGUGAUGGGUACAAUAAUACAAACGAUGUUUAAUUGGAA
.....-.......((((.(((((((..((...))..)))))))((((((((...(((((((((.((....)).))))))).))(((......))))))))))).....)))).. ( -26.00)
>consensus
AUAAA_AAAACUGCCAGAAUUAUUGAGGCGUUGCAACAAUAAUCAUCGCUUCAAUUUCGCUGUCAAUGAAUUUACAGUGAUGGGUACAAUAAUACAAACGUUGUUUAAUUGGAA
...........((((......(((((((((.((..........)).))))))))).(((((((.((....)).)))))))..))))((((...(((.....)))...))))... (-22.56 = -22.12 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:37 2006