| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,253,386 – 15,253,477 |
| Length | 91 |
| Max. P | 0.912123 |
| Location | 15,253,386 – 15,253,477 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 90.11 |
| Mean single sequence MFE | -17.74 |
| Consensus MFE | -14.80 |
| Energy contribution | -14.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15253386 91 - 23771897 ACACA--CACAUACGUGGAA--AA-AACGUAACGGAAAAGCAAAAGAAAAGCGGAGAAAGCAGCCAGAAAAAAAUUUGCUCGCUUCGUUUUCUGCU .....--....(((((....--..-.))))).......((((...(((((.(((((..(((((............)))))..)))))))))))))) ( -20.10) >DroSec_CAF1 142580 94 - 1 ACACACACACAUACAUGGAAAAAA-AACGUUACGGAAAAGCAAAAGAAAAGCGGAGAAAGCAGCCAGAAA-AAAUUUGCUCGCUUCGUUUUCUGCU ........................-.............((((...(((((.(((((..(((((.......-....)))))..)))))))))))))) ( -16.00) >DroSim_CAF1 150791 93 - 1 ACACACACACAUACUUUGAAA-AA-AACGUUACGGAAAA-CAAAAGAAAAGCGGAGAAAGCAGCCAGAAAAAAAUUUGCUCGCUUCGUUUUCUGCU .....................-..-...(((......))-)...((((((.(((((..(((((............)))))..)))))))))))... ( -15.00) >DroEre_CAF1 142906 87 - 1 ACACACAC----ACUCAGAA--AA-AGCGUUAC-GAAAAGCAAAAGAAAAGCGGAGAAAGCAGCCAGAAA-AAAUUUGCUCGCUUCGUUUUCUGCU ........----........--..-((((((..-....)))...((((((.(((((..(((((.......-....)))))..)))))))))))))) ( -17.50) >DroYak_CAF1 149020 91 - 1 ACACACACAC--ACUGAGAA--AAAACCGUUUCGGAAAAGCAAAAGAAAAGCGGAGAAAGCAGCCAGAAA-AAAUUUGCUCGCUUCGUUUUCUGCU ..........--.((((((.--.......))))))...((((...(((((.(((((..(((((.......-....)))))..)))))))))))))) ( -20.10) >consensus ACACACACACAUACUUAGAA__AA_AACGUUACGGAAAAGCAAAAGAAAAGCGGAGAAAGCAGCCAGAAA_AAAUUUGCUCGCUUCGUUUUCUGCU ............................................((((((.(((((..(((((............)))))..)))))))))))... (-14.80 = -14.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:29 2006