Locus 5562

Sequence ID 3L_DroMel_CAF1
Location 15,252,784 – 15,252,882
Length 98
Max. P 0.995647
window8797

overview

Window 7

Location 15,252,784 – 15,252,882
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 97.26
Mean single sequence MFE -24.26
Consensus MFE -24.74
Energy contribution -24.26
Covariance contribution -0.48
Combinations/Pair 1.08
Mean z-score -1.71
Structure conservation index 1.02
SVM decision value 2.60
SVM RNA-class probability 0.995647
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15252784 98 - 23771897
C-CCGCCCGCAGAUCGUAUGCUAAUUGCUUUCCAGCAGGAGAGGCAAAAGCAGCAGCUGUUGUAAUAACUCAGCCAUAAACUGCCCAGUAUACACUAAA
.-.............(((((((..(((((((((....))))).))))..((((..((((..((....)).))))......))))..)))))))...... ( -24.70)
>DroSec_CAF1 141973 98 - 1
C-CCGCCCGCAGAUCGUAUGCUAAUUGCUUUCCAGCAGGAGAUGCAAAAGCAGCAGCUGUUGUAAUAACUCAGCCAUAAACUGCCCAGUAUACACUAAA
.-.............(((((((..(((((((((....))))).))))..((((..((((..((....)).))))......))))..)))))))...... ( -24.70)
>DroSim_CAF1 150187 98 - 1
C-CCGCCCGCAGAUCGUAUGCUAAUUGCUUUCCAGCCGGAGAAGCAAAAGCAGCAGCUGUUGUAAUAACUCAGCCAUAAACUGCCCAGUAUACACUAAA
.-.............(((((((..(((((((((....)))).)))))..((((..((((..((....)).))))......))))..)))))))...... ( -24.70)
>DroEre_CAF1 142302 99 - 1
CCCCGCCCGCAGAUCGUAUGCUAAUUGCUUUGCAGCAGCAGAAGUAAAAGCAGCAGCUGUUGUAAUAACUCAGCCAUAAACUGCCCAGUAUACACUAAA
...............(((((((..(((((((((....)))).)))))..((((..((((..((....)).))))......))))..)))))))...... ( -22.50)
>DroYak_CAF1 148406 98 - 1
C-CCGCCCGCAGAUCGUAUGCUAAUUGCUUUCCAGCAGGAGAAGCAAAAGCAGCAGCUGUUGUAAUAACUCAGCCAUAAACUGCCCAGUAUACACUAAA
.-.............(((((((..(((((((((....)))).)))))..((((..((((..((....)).))))......))))..)))))))...... ( -24.70)
>consensus
C_CCGCCCGCAGAUCGUAUGCUAAUUGCUUUCCAGCAGGAGAAGCAAAAGCAGCAGCUGUUGUAAUAACUCAGCCAUAAACUGCCCAGUAUACACUAAA
...............(((((((..(((((((((....))))).))))..((((..((((..((....)).))))......))))..)))))))...... (-24.74 = -24.26 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:27 2006