Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,251,651 – 15,251,755 |
Length | 104 |
Max. P | 0.639229 |
Location | 15,251,651 – 15,251,755 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 89.42 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -20.18 |
Energy contribution | -21.18 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.76 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15251651 104 - 23771897 CAAAUGUGAAUUUAGCGCAGGAGUUGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA (((.((((.......))))....)))...............((((((....((.(((((((.....))))))).))...(((((....)))))))))))..... ( -29.00) >DroSec_CAF1 140871 104 - 1 CAAAUGUGAAUUUAGCGCAGAAGUAGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA ....(((........((((.............)))).....((((((....((.(((((((.....))))))).))...(((((....)))))))))))))).. ( -28.02) >DroSim_CAF1 149081 104 - 1 CAAAUGUGAAUUUAGCGCAGAAGUAGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA ....(((........((((.............)))).....((((((....((.(((((((.....))))))).))...(((((....)))))))))))))).. ( -28.02) >DroEre_CAF1 141160 94 - 1 CAAAUAUGAAUUUAGCGCAGGAGUGGGGAUA---------AUGCUCCUUAAUUGCCA-UGAAAAGGUCAGCGGGGAGGUCAUUCGCAGGAGUGGAAGUACCGAA ......(((.((((..((((...((((((..---------....)))))).))))..-))))....))).(((.....((((((....)))))).....))).. ( -21.10) >DroYak_CAF1 147207 94 - 1 CAAAUAUGAAUUUGGCGCAGGAGUGGGGAUA---------AUGCUCCUUAAUUGCCG-UGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGCAGUACGGAA ......(((.(((.((((((...((((((..---------....)))))).))).))-).)))...))).((.....(((((((....)))))))....))... ( -26.00) >consensus CAAAUGUGAAUUUAGCGCAGGAGUAGGGAUAAUGUGGGUAAUGCUCCUUAAUUGCCGUUGAAAAGGUCAGCGGGGAGGUCAUUCGAAGGAGUGGGAGUAGCGAA .........................................((((((....((.(((((((.....))))))).))...(((((....)))))))))))..... (-20.18 = -21.18 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:26 2006