| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,250,911 – 15,251,007 |
| Length | 96 |
| Max. P | 0.603041 |
| Location | 15,250,911 – 15,251,007 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.68 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -22.24 |
| Energy contribution | -22.80 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15250911 96 + 23771897 UUUGGUGGUGGCUAUACGUUAACUAAUUUGCCAAAUGGGGGAG-----------------------CUGAAAAUCCCUCCCCU-UGGCAGACAAACAAAUAAGCAAAUAGCAACAACGGA .((.((.((.(((((..(((......(((((((...(((((((-----------------------..(.....).)))))))-)))))))..........)))..))))).)).)).)) ( -25.79) >DroSec_CAF1 140129 96 + 1 UUUGGUGGUGGCUAUGCGUUAACUAAUUUGCCAAAUGGGGGAG-----------------------CUGAAAAUCCCUCCCCU-UGGCAGACAAACAAAUAAGCAAAUAGCAACAGCGGA ((((.((...(((((((.........(((((((...(((((((-----------------------..(.....).)))))))-)))))))...........)))..))))..)).)))) ( -29.75) >DroSim_CAF1 148341 96 + 1 UUUGGUGGUGGCUAUACGUUAACUAAUUUGCCAAAUGGGGGAG-----------------------CUGAAAAUCCCUCCCCU-UGGCAGACAAACAAAUAAGCAAAUAGCAACAGCGGA ((((.((...(((((..(((......(((((((...(((((((-----------------------..(.....).)))))))-)))))))..........)))..)))))..)).)))) ( -27.29) >DroEre_CAF1 140469 96 + 1 UCUGGUGGUGGCUAUACGUUAACUAAUUUGCCAAAUGGGGGAG-----------------------CUGAAUAUCCCUCCCCU-UGGCAGACAAACAAAUAAGCAAAUAGCAACAGCGGC .(((.((...(((((..(((......(((((((...(((((((-----------------------..(.....).)))))))-)))))))..........)))..)))))..)).))). ( -28.59) >DroYak_CAF1 146496 96 + 1 UUCGGUGGUGGCUAUACGUUAACUAAUUUGCCAAAUGGGGGAG-----------------------CUGAAAGUCCCUCCCCU-UGGCAGACAAACAAAUAAGCAAAUAGCAACAGCGGA ((((.((...(((((..(((......((((((((..(((((..-----------------------(.....)..)))))..)-)))))))..........)))..)))))..)).)))) ( -29.99) >DroAna_CAF1 132605 118 + 1 UUCGGUGGUGGCUGGGCCU--GCUAAUUUGCCAAAUUGAGGGGGUGACUUCCCUUUGUUGUUGUCACUGAACUUCCCGCCCCUUUCACAGACAAACAAAUAAGCAAACAGCAACAGUGGA ((((.((...((((....(--(((.(((((.(((...((((((....)..)))))..)))(((((..((((............))))..))))).))))).))))..))))..)).)))) ( -32.00) >consensus UUUGGUGGUGGCUAUACGUUAACUAAUUUGCCAAAUGGGGGAG_______________________CUGAAAAUCCCUCCCCU_UGGCAGACAAACAAAUAAGCAAAUAGCAACAGCGGA .(((.((...(((((..(((......(((((((...(((((((.................................))))))).)))))))..........)))..)))))..)).))). (-22.24 = -22.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:25 2006