Locus 556

Sequence ID 3L_DroMel_CAF1
Location 1,592,108 – 1,592,211
Length 103
Max. P 0.854810
window852

overview

Window 2

Location 1,592,108 – 1,592,211
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 74.34
Mean single sequence MFE -23.32
Consensus MFE -18.49
Energy contribution -18.29
Covariance contribution -0.20
Combinations/Pair 1.36
Mean z-score -1.00
Structure conservation index 0.79
SVM decision value 0.80
SVM RNA-class probability 0.854810
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1592108 103 + 23771897
UUAGGAUACCCAGUGUUUGGCGAGCACGAAGGGGUAUGUCCAUUUGCAUGGUCUAUAUAAAAGAAAUCUUUGCAGAUUUGAAAUGGCCAAAUUCGAUUCCA-AA
...((((((((.((((((...))))))....)))))((.((((((.((.(((((.....((((....))))..))))))))))))).))........))).-.. ( -26.10)
>DroSec_CAF1 11022 103 + 1
CUAAGAUACCCAGUGUUUGGCAAGCACGAAGGGGUAUAUUCAUUUGCAUGGUCUAGAUGACAGAAAUCUAUGCAGAUUUGAAAUGGCCGAAUUCAAUCACA-AA
.....((((((.(((((.....)))))....)))))).((((((((((((((((.......)))...)))))))))..))))...................-.. ( -23.90)
>DroSim_CAF1 11710 102 + 1
CUAAGAUACCCAGUGUUU-GCGAGCACGAAGGGGUAUAUCCAUUUGCAUGGUCUAUAUAACAGAAAUCUAUGUAGAUUUGGAACGGCCGAAUUCGAUCCCA-CA
.....((((((.(((((.-...)))))....)))))).((((((((((((((((.......)))...)))))))))..))))..(..((....))..)...-.. ( -26.10)
>DroEre_CAF1 10957 84 + 1
CUUAGCUACCCAGUGUUUGUCGAGCAGGAAGGGGUAUACCUAUUUGAGUAGACUAGAUGA-AGAAAUCUAUCCAAAGAU------------------CCCA-AA
(((.(((...(((...)))...))))))..(((((....((((....))))..(((((..-....))))).......))------------------))).-.. ( -14.20)
>DroYak_CAF1 10941 99 + 1
CUUUGAUACCCAGUGUUUGUCGCGCAGGAAGGGGUAUACCCCUUUGAAUAGUCUAGAUGAAAGAAAUCUAUUCGAAGAUGUAAU-----AUUUCUAUCCCAAAG
(((((.......((((.....)))).(((((..((((((..(((((((((((((.......)))...))))))))))..)).))-----))..)).)))))))) ( -26.30)
>consensus
CUAAGAUACCCAGUGUUUGGCGAGCACGAAGGGGUAUAUCCAUUUGCAUGGUCUAGAUGAAAGAAAUCUAUGCAGAUUUGAAAUGGCC_AAUUCGAUCCCA_AA
.....((((((.((((((...))))))....))))))....((((((((((................))))))))))........................... (-18.49 = -18.29 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:16 2006