| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,243,608 – 15,243,724 |
| Length | 116 |
| Max. P | 0.994360 |
| Location | 15,243,608 – 15,243,724 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.61 |
| Mean single sequence MFE | -31.47 |
| Consensus MFE | -27.96 |
| Energy contribution | -28.27 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.89 |
| SVM decision value | 2.47 |
| SVM RNA-class probability | 0.994360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15243608 116 - 23771897 AUUUUAACGGCUCACGCUUUUGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCUACACCCCAGGU-AUCGAGCC---CCCUUCCUGCCA ........(((((((((.(((((.(..(((((.....)))))..)..))))).)))).))))).....((((((((....)))))))).....(((-(..(((..---..)))..)))). ( -32.40) >DroSec_CAF1 132915 116 - 1 AUUUUAACGGCUCACGCUUUUGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCUACACCCCAGGA-AUCGAGCA---UACUUCCUGCCA ........(((((((((.(((((.(..(((((.....)))))..)..))))).)))).))))).....((((((((....))))))))...(((((-(.......---...))))))... ( -33.00) >DroSim_CAF1 140751 116 - 1 AUUUUAACGGCUCACGCUUUUGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCUACACCCCAGGA-AUCGAGCA---UACUUCCUGCCA ........(((((((((.(((((.(..(((((.....)))))..)..))))).)))).))))).....((((((((....))))))))...(((((-(.......---...))))))... ( -33.00) >DroEre_CAF1 132943 115 - 1 AUUUUAACGGCUCACGCUU-UGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCUGCGCCCCAGGA-AUCGAGCC---GCCUCCCUGCCA ........(((((((((((-(((.(..(((((.....)))))..)..))))).)))).)))))......(..((((....))))..)....((((.-...(((..---..)))))))... ( -29.80) >DroYak_CAF1 138797 116 - 1 AUUUUAACGGCUCACGCUUUUGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCUGCGCCCCAGGA-AUCGAGUU---CCCUUCCCUCCA ........(((((((((.(((((.(..(((((.....)))))..)..))))).)))).)))))......(..((((....))))..)......(((-...(((..---..)))...))). ( -29.20) >DroAna_CAF1 125746 120 - 1 AUUUUAACGGCUCACGCUUUUGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCCACCCCCCAGGAUAUCGUCCUUUGUACCUCCUCCCU ........(((((((((.(((((.(..(((((.....)))))..)..))))).)))).)))))......(((((((....))))))).....(((((...)))))............... ( -31.40) >consensus AUUUUAACGGCUCACGCUUUUGGACCCUGAAAACCGCUUUUAAUGCCCCAAACGCGUCGAGCUAAUUUUGUGGCAUUUUUAUGCUACACCCCAGGA_AUCGAGCA___UACUUCCUGCCA ........(((((((((.(((((.(..(((((.....)))))..)..))))).)))).))))).....((((((((....))))))))...((((..................))))... (-27.96 = -28.27 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:14 2006