Locus 5552

Sequence ID 3L_DroMel_CAF1
Location 15,240,592 – 15,240,698
Length 106
Max. P 0.566284
window8775

overview

Window 5

Location 15,240,592 – 15,240,698
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.34
Mean single sequence MFE -25.72
Consensus MFE -17.59
Energy contribution -17.70
Covariance contribution 0.11
Combinations/Pair 1.11
Mean z-score -3.24
Structure conservation index 0.68
SVM decision value 0.07
SVM RNA-class probability 0.566284
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15240592 106 - 23771897
UGGGUGUGCUAGGUGGCACAUAAUUUUUUCUCAUCUUCCCUUUUCUUGAAUGCCGCAUAGUGCUAAAUUGCACACACAC--------ACACC----GACCCAACCC--CCCAAACACAUA
..((((((....((((((.........(((.................)))))))))...((((......)))).....)--------)))))----..........--............ ( -22.93)
>DroSec_CAF1 129879 104 - 1
UGGGUGUGCUGGGUGGCACAUAAUUUUUUCUCAUCUUCCCUUUUCUUGAAUGCCGCAUAGUGCUAAAUUGCACACACAC--------ACA------CACCCAACCC--CCCAAACACAUA
((((((((.((.((((((.........(((.................)))))))))...((((......)))).....)--------)))------))))))....--............ ( -28.33)
>DroSim_CAF1 137700 110 - 1
UGGGUGUGCUGGGUGGCACAUAAUUUUUUCUCAUCUUCCCUUUUCUUGAAUGCCGCAUAGUGCUAAAUUGCACACACAC--------ACACACAUACACCCAACCC--CCCAAACACAUA
((((((((.((.((((((.........(((.................)))))))))...((((......))))......--------.....))))))))))....--............ ( -26.43)
>DroEre_CAF1 130047 102 - 1
UG-GUGUGCUGGGUGGCACAUAAUUUUUU--CAUCUUCCCUUUUCUUGAAUGCCGCAGAGUGCUAAAUUGCACACACAC--------ACACA----CACCCAACC---CCCAAACACAUA
.(-(((((.((.((((((.........((--((.............))))))))))...((((......))))......--------.))))----)))).....---............ ( -24.92)
>DroYak_CAF1 135798 111 - 1
UGGGUGUGCUGGGUGCCACAUAAUUUUUU--CAUCUUCCCUUUUCUUGAAUGCCGCAGAGUGCUAAAUUGCACACACACAUAUACAUACACA----CACCCAACC---CCCAAACACAUA
(((((((((((((((............((--((.............)))))))).))).((((......)))).................))----))))))...---............ ( -24.22)
>DroAna_CAF1 122689 105 - 1
GGUGUGCGGUGUGUGGCACAUAAUUUUUUUUCAUCUUCCCCUUUCUUGAAUGUCGCAAAGUGCUAAAUUGCACACACCA--------AU-------CCCCCAUGCCACCACACACACAUA
.(((((..(((.((((((...........((((.............)))).........((((......))))......--------..-------......))))))))).)))))... ( -27.52)
>consensus
UGGGUGUGCUGGGUGGCACAUAAUUUUUUCUCAUCUUCCCUUUUCUUGAAUGCCGCAUAGUGCUAAAUUGCACACACAC________ACACA____CACCCAACCC__CCCAAACACAUA
...((((..(((((((((((..........................))..))))))...((((......))))....................................))).))))... (-17.59 = -17.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:06 2006