Locus 5551

Sequence ID 3L_DroMel_CAF1
Location 15,239,023 – 15,239,124
Length 101
Max. P 0.779711
window8774

overview

Window 4

Location 15,239,023 – 15,239,124
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.94
Mean single sequence MFE -25.82
Consensus MFE -10.32
Energy contribution -10.42
Covariance contribution 0.10
Combinations/Pair 1.24
Mean z-score -2.53
Structure conservation index 0.40
SVM decision value 0.55
SVM RNA-class probability 0.779711
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15239023 101 + 23771897
UCAACCCAAUUGUAGUGACGUGUG--------UG----------CAUAUACGCAAAAAAA-AAAAAAAUUUAGAAAAGAACCAGCACGAUUGACCUACAAAAUCGGAGGGAGAUUCUAGA
...................(((((--------(.----------...)))))).......-.......(((((((.....((..(.(((((.........))))))..))...))))))) ( -14.80)
>DroSec_CAF1 128268 104 + 1
UCAACCCAAUUGUAGUGACGUGUG--------UGCGAAG-AACGCAUAUACGCAAAA-------AAAAUUGGAAAAAGAACCAGCACGAUUGACCUACAAAAUCGGAGGGAGAUUCUAGA
.....((((((....((.((((((--------((((...-..))))))))))))...-------..))))))....((((((..(.(((((.........))))))..))...))))... ( -29.60)
>DroSim_CAF1 136094 107 + 1
UCAACCCAAUUGUAGUGACGUGUG--------UGCGAAG-AACGCAUAUACGCAAAAAA----AAAAAUUGGGAAAAGAACCCGCACGAUUGACCUACAAAAUCGGAGGGAGAUUAUAGA
....(((((((....((.((((((--------((((...-..)))))))))))).....----...))))))).......(((...(((((.........)))))..))).......... ( -33.70)
>DroEre_CAF1 128159 111 + 1
UCAACCCAAUGGUAGUGACGUGUG--------UGCAGAG-AACGCAUAUACCCGAAAAAAUGAAAAAAUAGGGAAAAGAAGCAGCACGAUUGACCUACAAAAUCGGAGGGAGAUGGUAGA
......((((.((.((..(.((((--------(((....-...)))))))(((.................))).......)..)))).))))..((((...(((.......))).)))). ( -21.03)
>DroYak_CAF1 134160 103 + 1
UCAACCCAAUUGUAGUGACGUGUG--------UGCAAAG-AACGCAUAUAUCCUAAA-------AAAAUUGGGAAAA-AACCAGCACGAUUGACCUACAAAAUCGGAGGGAGAUCGUAGA
....(((((((.(((.((..((((--------((.....-..))))))..)))))..-------..)))))))....-.......((((((..(((.(......).)))..))))))... ( -30.70)
>DroAna_CAF1 121417 108 + 1
UUUUCCCAG----GGUGACGUGUGAGUGUGUAUGUGAAGAAACGCACACAUGCAAAAAA-------AGAAAAGAAAAGAACCGGCACGAUUGACCUACAAACU-GCAGGGGAAGAGCAGA
(((((((.(----(((.((((((..((((((.((((......)))).))))))......-------......(........).)))))..).)))).....(.-...))))))))..... ( -25.10)
>consensus
UCAACCCAAUUGUAGUGACGUGUG________UGCGAAG_AACGCAUAUACGCAAAAAA_____AAAAUUGGGAAAAGAACCAGCACGAUUGACCUACAAAAUCGGAGGGAGAUUGUAGA
....(((...........((((((........(((........)))))))))..................................(((((.........)))))..))).......... (-10.32 = -10.42 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:05 2006