Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,586,717 – 1,586,815 |
Length | 98 |
Max. P | 0.908406 |
Location | 1,586,717 – 1,586,815 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -30.78 |
Consensus MFE | -14.65 |
Energy contribution | -13.85 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.52 |
Mean z-score | -1.64 |
Structure conservation index | 0.48 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1586717 98 + 23771897 GAAUGCCAGGCACAUGGAGUGCCUGUUCGCCAAGUGGCUGGGGGACACUAGCUCGGUCAAUGGAGUGGG--UUAUAUGA---CCUGCGGUCAAAAUACCUA----------UU (((...(((((((.....)))))))))).(((..((((((((.........)))))))).)))((((((--(....(((---((...)))))....)))))----------)) ( -36.00) >DroSec_CAF1 5632 98 + 1 GAAUGCCAGGCACAUGGAGUGCCUGUUCGCCACGUGGCUGAGGGACAAUAACUCGGUCAAUGGAGUGGG--UUAUGUGA---CCUGCGGCCAAUAAACCUA----------UU (((...(((((((.....))))))))))......(((((((((....((((((((.((....)).))))--))))....---))).)))))).........----------.. ( -37.50) >DroSim_CAF1 5728 98 + 1 GAAUGCCAGGCACAUGGAGUGCCUGUUCGCCACGUGGCUGAGGGACAAUAACUCGGUCAAUGGAGUGGG--UUAUGUGA---CCUGCGGUCAAAAAACCUA----------UU (((...(((((((.....)))))))))).(((..((((((((.........)))))))).)))((((((--((...(((---((...)))))...))))))----------)) ( -39.50) >DroEre_CAF1 5574 103 + 1 GAAUGCCAGACACUUGGAGUGCCUGUUCACCAAGUGGAUGAGGGACAAUAACUCGAUCAAUGGAGUGGG--UGAUAUAUUUCCCUGUGGUCGAAAUACCUU--------AAAA ......((..(((((((.(........).)))))))..))(((((.(((((((((.((....)).))))--)....)))))))))..(((......)))..--------.... ( -25.30) >DroWil_CAF1 10986 97 + 1 CAAUGCAAAAUAUAUGGAGUACUUAUUUUCAAAAUGGGUGAAAGAUGAAACUUCUGUUCAUGUGGUAUGAAUGAUA----------------AUGUACAAUUUUUUUUUGCUA ....((((((........(((((((((((((...((.((((((((.......))).))))).))...)))).))))----------------).)))).......)))))).. ( -18.16) >DroYak_CAF1 5586 99 + 1 GAAUGCUAGGCACUUGGAGUGCCUGUUCGCCAAGUGGAUGAGGGACAAUAGCUCGGUCAAUGGAGUGGG--UGAUAUCAUUUCCUGUAGCUUAAAUACCUC------------ .......((((((.....))))))((((((...))))))((((......(((((((.....(((((((.--.....)))))))))).))))......))))------------ ( -28.20) >consensus GAAUGCCAGGCACAUGGAGUGCCUGUUCGCCAAGUGGCUGAGGGACAAUAACUCGGUCAAUGGAGUGGG__UGAUAUGA___CCUGCGGUCAAAAUACCUA__________UU ....(((((((((.....))))))..(((((...(((.((((.........)))).)))...).))))...................)))....................... (-14.65 = -13.85 + -0.80)
Location | 1,586,717 – 1,586,815 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 70.03 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -12.29 |
Energy contribution | -11.88 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.53 |
Mean z-score | -1.88 |
Structure conservation index | 0.48 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1586717 98 - 23771897 AA----------UAGGUAUUUUGACCGCAGG---UCAUAUAA--CCCACUCCAUUGACCGAGCUAGUGUCCCCCAGCCACUUGGCGAACAGGCACUCCAUGUGCCUGGCAUUC ..----------..(((......)))((.((---(((.....--..........)))))..)).(((((......(((....)))...(((((((.....)))))))))))). ( -30.66) >DroSec_CAF1 5632 98 - 1 AA----------UAGGUUUAUUGGCCGCAGG---UCACAUAA--CCCACUCCAUUGACCGAGUUAUUGUCCCUCAGCCACGUGGCGAACAGGCACUCCAUGUGCCUGGCAUUC ..----------........((.(((((.((---(((.....--..........)))))(((.........)))......))))).))(((((((.....)))))))...... ( -29.86) >DroSim_CAF1 5728 98 - 1 AA----------UAGGUUUUUUGACCGCAGG---UCACAUAA--CCCACUCCAUUGACCGAGUUAUUGUCCCUCAGCCACGUGGCGAACAGGCACUCCAUGUGCCUGGCAUUC ..----------..((((....))))((.((---(((.....--..........)))))(((.........))).(((....)))...(((((((.....))))))))).... ( -30.06) >DroEre_CAF1 5574 103 - 1 UUUU--------AAGGUAUUUCGACCACAGGGAAAUAUAUCA--CCCACUCCAUUGAUCGAGUUAUUGUCCCUCAUCCACUUGGUGAACAGGCACUCCAAGUGUCUGGCAUUC ....--------..(((......)))...((((...(((...--...((((........)))))))..))))(((((.....))))).(((((((.....)))))))...... ( -23.50) >DroWil_CAF1 10986 97 - 1 UAGCAAAAAAAAAUUGUACAU----------------UAUCAUUCAUACCACAUGAACAGAAGUUUCAUCUUUCACCCAUUUUGAAAAUAAGUACUCCAUAUAUUUUGCAUUG ..((((((.......((((.(----------------(((..((((.......((((.(((.......))))))).......)))).))))))))........)))))).... ( -13.60) >DroYak_CAF1 5586 99 - 1 ------------GAGGUAUUUAAGCUACAGGAAAUGAUAUCA--CCCACUCCAUUGACCGAGCUAUUGUCCCUCAUCCACUUGGCGAACAGGCACUCCAAGUGCCUAGCAUUC ------------((((.((...((((...((.((((......--.......))))..)).))))...)).)))).........((....((((((.....)))))).)).... ( -25.22) >consensus AA__________UAGGUAUUUUGACCGCAGG___UCAUAUAA__CCCACUCCAUUGACCGAGUUAUUGUCCCUCAGCCACUUGGCGAACAGGCACUCCAUGUGCCUGGCAUUC ..............(((......)))...............................(((((.................)))))....(((((((.....)))))))...... (-12.29 = -11.88 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:15 2006