Locus 5547

Sequence ID 3L_DroMel_CAF1
Location 15,231,478 – 15,231,573
Length 95
Max. P 0.967632
window8769

overview

Window 9

Location 15,231,478 – 15,231,573
Length 95
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 96.65
Mean single sequence MFE -27.81
Consensus MFE -25.84
Energy contribution -26.12
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.59
Structure conservation index 0.93
SVM decision value 1.61
SVM RNA-class probability 0.967632
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15231478 95 + 23771897
-UAAUCAAUAUACCCCAUCAACAUAUCAGGUGUAUAACAAGCAGCCGCGGGUCUGCCGCUGCAGCUUCUGCUGUAUUGGUUGCAAUUUAUAGGCGC
-......(((((((..............))))))).....((((((((((.....))))((((((....))))))..))))))............. ( -29.94)
>DroSec_CAF1 120850 95 + 1
-UAAUCAAUAUACCCCAUCAACAUAUCAGGUGUAUAACAAGCAGCCGCGGGUCUGCCGCUGCGGCUUCUGCUGUAUUAGUUGCAAUUUAUAGGCGC
-......(((((((..............))))))).....(((((.((((.....))))((((((....))))))...)))))............. ( -25.24)
>DroSim_CAF1 128688 95 + 1
-AAAUCAAUAUACCCCAUCAACAUAUCAGGUGUAUAACAAGCAGCCGCGGGUCUGCCGCUGCGGCUUCUGCUGUAUUGGUUGCAAUUUAUAGGCGC
-......(((((((..............))))))).....((((((((((.....))))((((((....))))))..))))))............. ( -29.24)
>DroEre_CAF1 120784 95 + 1
-UAAUCGAUAUACCCCAUCAACAUAUCAGGUGUAUAACAAGCAGCCGCGGGUCUGCCGCUGCGGCUUCUGCUGUAUUGGUUGCAAUUUAUAGGCGC
-.....(((((...........)))))..((.(((((...((((((((((.....))))((((((....))))))..))))))...))))).)).. ( -30.50)
>DroAna_CAF1 114590 96 + 1
AUAAUCAAUAUACCCCAUCAACAUAUCAGGUGUAUAACAAGCAGCCGCGGGUCUGGUGAUGCGGCUUCUGCUGUAUUGGUUGCAAUUUAUAGGCGC
.......(((((((..............))))))).....((((((((.......))((((((((....))))))))))))))............. ( -24.14)
>consensus
_UAAUCAAUAUACCCCAUCAACAUAUCAGGUGUAUAACAAGCAGCCGCGGGUCUGCCGCUGCGGCUUCUGCUGUAUUGGUUGCAAUUUAUAGGCGC
.......(((((((..............))))))).....((((((((((.....))))((((((....))))))..))))))............. (-25.84 = -26.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:00 2006