| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,231,181 – 15,231,291 |
| Length | 110 |
| Max. P | 0.854933 |
| Location | 15,231,181 – 15,231,291 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 85.36 |
| Mean single sequence MFE | -36.06 |
| Consensus MFE | -22.18 |
| Energy contribution | -23.10 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15231181 110 - 23771897 AUUUGGGGGAUCCUUUCUCAGGUGUGUGCUUAAAUGGGAGCUCACUCCGGUGGGAUAAGCGUACACCAUUAAAAGAGAUGGG-----AUACUCUCGAGAUCUAACGCAAUAAAAA .(((((((((((((.((((.((((((((((((.((.((((....)))).))....)))))))))))).......)))).)))-----)).))))))))................. ( -39.20) >DroSec_CAF1 120547 115 - 1 AUUUGGAGGAUCCUUUCUCAGGUGUGUGCUCAAAUGGGAGCUCACUCCGGUGGGAUAAGCGUACACCAUUAAAAGAGAUGGGAAGAGAUGCUCCCAGGCUCUAGCGCAAUAAAAA ....((((.(((.(((((((((.(((.((((......)))).))).))((((...........))))...........))))))).))).))))...((....)).......... ( -38.20) >DroSim_CAF1 128395 105 - 1 AUUUGGAGGAUCUUUUCUCAGGUGUGUGCUCAAAUGGGAGCUCACUCCGUUGGGAUAAGCGUACACCAUUAAAAGAGAUGGU-----AUGCUCC-----UCUAGCGCAAUAAAAA ..((((((((.(((.(((((((.(((.((((......)))).))).))..))))).))).(((.((((((......))))))-----.))))))-----)))))........... ( -37.00) >DroEre_CAF1 120502 107 - 1 AUUUGGGGGAUCCU--CUCAGGUGUCUGCCUAAAUGGGAGCUCACACCGGUGGGAUAAGCGCACA-CAUUAAAAUAGAUACG-----AUGUUCCCGAGUUCUAACUCAAUAAAAA (((((((((((((.--....)).)))).)))))))((((((((......(((.(.....).))).-.(((......)))..)-----).))))))((((....))))........ ( -26.90) >DroYak_CAF1 125891 110 - 1 AUUUGAGGGAUCCUUUCUCAGGUGUGUGCUCAAAUGGGAGCUCACUCCGCUGGGAUAAGCGUACGCCAUUAAAUGAGAUAGG-----AUGUUCUCGAGUUCUAACUCAAUAAAAG ....((((((((((.(((((((.(((.((((......)))).))).))(((......))).............))))).)))-----)).)))))((((....))))........ ( -39.00) >consensus AUUUGGGGGAUCCUUUCUCAGGUGUGUGCUCAAAUGGGAGCUCACUCCGGUGGGAUAAGCGUACACCAUUAAAAGAGAUGGG_____AUGCUCCCGAGUUCUAACGCAAUAAAAA .(((((((((((((......((.(((.((((......)))).))).))...))))).........(((((......))))).........))))))))................. (-22.18 = -23.10 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:59 2006