Locus 5544

Sequence ID 3L_DroMel_CAF1
Location 15,226,134 – 15,226,237
Length 103
Max. P 0.736693
window8762

overview

Window 2

Location 15,226,134 – 15,226,237
Length 103
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 92.71
Mean single sequence MFE -23.14
Consensus MFE -21.95
Energy contribution -21.48
Covariance contribution -0.47
Combinations/Pair 1.14
Mean z-score -1.02
Structure conservation index 0.95
SVM decision value 0.44
SVM RNA-class probability 0.736693
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15226134 103 - 23771897
CCAAGUGGAGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCUACUCUACAGAGACAAAAAUAG-U
....(((((((((((....((((....)))).)))))..((((..(((((..((((......)))).)))))..))))....))))))..............-. ( -23.40)
>DroSec_CAF1 115435 103 - 1
CCAAGUGGAGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCCACUCUACAGAGACAAAAAUAA-U
....(((((((((((....((((....)))).))))).....((.(((.....))).))((((((..........)))))).))))))..............-. ( -23.80)
>DroSim_CAF1 123257 103 - 1
CCAAGUGGAGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCCACUCUACAGAGACAAAAAAAA-U
....(((((((((((....((((....)))).))))).....((.(((.....))).))((((((..........)))))).))))))..............-. ( -23.80)
>DroEre_CAF1 115550 103 - 1
CCAAGUGGGGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCCACUCUACAGAGAAAACAAUUU-U
....(((((((((((....((((....)))).))))).....((.(((.....))).))((((((..........)))))).))))))..............-. ( -22.90)
>DroYak_CAF1 120793 103 - 1
CCAAGUGGAGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCCACUUUGCAGAGAAAGAAAUCA-U
((....)).((((.......((((((((..............((.(((.....))).))((((((..........))))))..))))))))......)))).-. ( -24.12)
>DroAna_CAF1 109680 104 - 1
CCAAGUGGAGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCAAUUUAACACUUUCGGAAAUUAGU
((....((((((((((.....((((((........(((...))).(((((...(((...)))..))))).......)))))))))))).)))).))........ ( -20.80)
>consensus
CCAAGUGGAGGUUAAAAAAAUUUGCAAAAAUAUUAACGAAACGUAGGCAGAGAGCCAACGGCGGCUGCUGUUCCUGUUGCCACUCUACAGAGACAAAAAUAA_U
....(((((((((((....((((....)))).)))))..((((..(((((..((((......)))).)))))..))))....))))))................ (-21.95 = -21.48 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:53 2006