| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,222,427 – 15,222,523 |
| Length | 96 |
| Max. P | 0.731017 |
| Location | 15,222,427 – 15,222,523 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 74.83 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -17.85 |
| Energy contribution | -17.85 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.731017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15222427 96 + 23771897 UGCACUGGGAGAAAAAGGGGAGAGACACAUUCCCAGUAAGACAGCAAGACAGACGGGCAUCUGCUGGCGACCCAUUAGCCAGAAAUGG------CCAGCAGA (((..((((.......(((((........))))).........((.((.((((......)))))).))..))))...((((....)))------)..))).. ( -30.30) >DroEre_CAF1 112184 78 + 1 UGCACUGGGAGAAAAUGGGGCGAAGUAC--UGGCG----------------GACGGGCAGCUGCUGGCGAGCCAUUAGCCAGAAAUGG------CCAGCAGA (((..........(((((..((.(((((--((.(.----------------....).))).))))..))..))))).((((....)))------)..))).. ( -26.00) >DroYak_CAF1 116893 100 + 1 UGCACUGGGAGAAAAUGGGGGGAAGAAA--UGCCGAUCCGACAGCAAGACAGACGGGCAGCUGCUGGCGACCCAUUAGCCAGAAAUGGCAUUAGCCAGCAGA (((.(((........((..(((..(...--...)..)))..))..........)))))).((((((((.........((((....))))....)))))))). ( -30.99) >consensus UGCACUGGGAGAAAAUGGGGAGAAGAAC__UGCCG_U__GACAGCAAGACAGACGGGCAGCUGCUGGCGACCCAUUAGCCAGAAAUGG______CCAGCAGA (((.(((..............................................)))))).(((((((....(((((.......)))))......))))))). (-17.85 = -17.85 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:52 2006