Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,216,023 – 15,216,126 |
Length | 103 |
Max. P | 0.687918 |
Location | 15,216,023 – 15,216,126 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 94.22 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -22.46 |
Energy contribution | -22.38 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.16 |
Structure conservation index | 0.93 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15216023 103 + 23771897 GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAA--UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUGG ((((((((((.((((((.((((.((.((....))........--.......(....)..)).))))))))))...)))))((((((......))))))))))).. ( -24.40) >DroSec_CAF1 105542 103 + 1 GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAA--UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACGCUUACUUUGGUGG ((((((((((.((((((.((((.((.((....))........--.......(....)..)).))))))))))...)))))((((((......))))))))))).. ( -24.20) >DroSim_CAF1 112903 102 + 1 GCCUAUUUGAAUUAGAGUCUGGGUU-ACUAAAGUAUAAAAAA--AAAGACACGGAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUAA ..........((((((((..((((.-................--.......(....)...((((.(((((.(....).))))).)).))))))..)))))))).. ( -22.20) >DroEre_CAF1 105906 103 + 1 GCCAAUGCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAGAAA--UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGUCUACCCUUACUUUGGCGG ((((((....)))(((((..((((..................--.......(....)..(((((.(((((.(....).))))).)))))))))..)))))))).. ( -27.40) >DroYak_CAF1 110135 105 + 1 GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAAUAUAAGACACGAAAGAAAGGCCAGUUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUGG .(((((((......)))).)))....(((((((((............(((.(....).....((......))..)))......(((....))).))))))))).. ( -23.20) >consensus GCCAAUUCGAAUUAGAGUCUGGGUUAACUAAAGUAUAAAAAA__UAAGACACGAAAGAAAGGCCAGCUUUGGAGGUCGAAAGUGGGACUACCCUUACUUUGGUGG ((((((((((.((((((.((((.((.((....)).................(....)..)).))))))))))...)))))((((((......))))))))))).. (-22.46 = -22.38 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:49 2006