Locus 5537

Sequence ID 3L_DroMel_CAF1
Location 15,199,793 – 15,199,907
Length 114
Max. P 0.609936
window8750

overview

Window 0

Location 15,199,793 – 15,199,907
Length 114
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 78.75
Mean single sequence MFE -34.30
Consensus MFE -22.95
Energy contribution -22.40
Covariance contribution -0.55
Combinations/Pair 1.12
Mean z-score -1.27
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.609936
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15199793 114 + 23771897
CGUGGAGUAGAACUCGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGAAUUGAAAUUGUUUGCUCGGCUUUGACGCUCAGCGGAACCGACAGGCGGGAAACGGCGG-GGAG
.((.((((((((((((((..........))))))).(((((..(.....)..))))).....))))))).)).......(((.(((....)).)..((.(....).))))-)... ( -33.80)
>DroVir_CAF1 78485 94 + 1
---AGAAAGAAACUCGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGA-----AAUUGUUCGUUUGGCGUUGACGCUCAACGAAACAGACAGGGGAGA-------------
---.........(((.(((..((((((.((((........)))).)))))).-----..(((((((((.((((....)))).)))).)))))..))).))).------------- ( -30.40)
>DroEre_CAF1 89524 114 + 1
CGUGGAGUAAAACUCGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGAAUUGGAAUUGUUUGCUCGGCUUUGACGCUCAGCGGAGCCGACAGGCGGGAAACGGCGG-GGAG
............((((((...((((((.((((........)))).)))))).........((((((.(((((((((.(.....))))))))))))))))(....))))))-)... ( -39.60)
>DroYak_CAF1 93348 113 + 1
AGUGGAGUAGAACUUGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGAAUUGGAAUUGUUUGCUCCG-UUUGACGCUCAGCGGAACCGACAGGCGGGAAACGGCGG-GGAG
.((((((((((.....(((((((((((.((((........)))).))))))..)))))....))))))))(-(((..((((...((....))...))))..)))).))..-.... ( -38.00)
>DroMoj_CAF1 83107 94 + 1
---AAAAAGAAACUCGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGA-----AAUUGUUCGUUUGGCGUUGACGCUCAACGAAACAGACAGGGGACA-------------
---.....((.(((((((..........))))))).))..((((((.(((..-----..(((((((((.((((....)))).)))).))))).)))))))))------------- ( -32.40)
>DroAna_CAF1 84356 109 + 1
UGGAGAGGAAAACUCGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGA------AUUGUUUGCUCGGCUUUGACGCUCAGCGGAACCGACAGCGGGGAAUCGGAAUUUCAA
(((((((.....))).)))).(((.(((...(((((((((.(((.....(.(------(....)).)..))).)))))))))..((....))))).)))(((((....))))).. ( -31.60)
>consensus
_GUAGAGUAAAACUCGUCUAACCGGUGUGACGAGUGUCAAUGUCUCAUUGGA_____AAUUGUUUGCUCGGCUUUGACGCUCAGCGGAACCGACAGGCGGGAAACGGCGG_GGAG
............((.(((...((((((.((((........)))).))))))...........((((((.(((......))).))))))...)))))................... (-22.95 = -22.40 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:52:42 2006